Strain Fitness in Dechlorosoma suillum PS around Dsui_2870

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2869 and Dsui_2870 are separated by 99 nucleotidesDsui_2870 and Dsui_2871 are separated by 69 nucleotides Dsui_2869: Dsui_2869 - transcriptional regulator, at 3,063,842 to 3,064,813 _2869 Dsui_2870: Dsui_2870 - putative permease, at 3,064,913 to 3,065,839 _2870 Dsui_2871: Dsui_2871 - FHA domain-containing protein, at 3,065,909 to 3,066,799 _2871 Position (kb) 3064 3065 3066Strain fitness (log2 ratio) -1 0 1 2at 3063.946 kb on - strand, within Dsui_2869at 3063.947 kb on - strand, within Dsui_2869at 3064.002 kb on + strand, within Dsui_2869at 3064.194 kb on - strand, within Dsui_2869at 3064.356 kb on + strand, within Dsui_2869at 3064.465 kb on + strand, within Dsui_2869at 3064.545 kb on - strand, within Dsui_2869at 3064.632 kb on - strand, within Dsui_2869at 3064.633 kb on + strandat 3064.881 kb on - strandat 3065.006 kb on + strand, within Dsui_2870at 3065.133 kb on + strand, within Dsui_2870at 3065.154 kb on + strand, within Dsui_2870at 3065.267 kb on + strand, within Dsui_2870at 3065.326 kb on + strand, within Dsui_2870at 3065.467 kb on + strand, within Dsui_2870at 3065.482 kb on + strand, within Dsui_2870at 3065.594 kb on + strand, within Dsui_2870at 3065.757 kb on + strandat 3065.805 kb on + strandat 3065.847 kb on - strandat 3065.967 kb on - strandat 3065.975 kb on - strandat 3066.197 kb on + strandat 3066.624 kb on - strand, within Dsui_2871at 3066.626 kb on + strandat 3066.665 kb on + strand, within Dsui_2871at 3066.776 kb on + strandat 3066.833 kb on - strandat 3066.833 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
remove
3,063,946 - Dsui_2869 0.11 +2.1
3,063,947 - Dsui_2869 0.11 +0.8
3,064,002 + Dsui_2869 0.16 -0.5
3,064,194 - Dsui_2869 0.36 +0.3
3,064,356 + Dsui_2869 0.53 -1.0
3,064,465 + Dsui_2869 0.64 +0.9
3,064,545 - Dsui_2869 0.72 -0.9
3,064,632 - Dsui_2869 0.81 -0.1
3,064,633 + +0.1
3,064,881 - +2.1
3,065,006 + Dsui_2870 0.10 +0.1
3,065,133 + Dsui_2870 0.24 -0.4
3,065,154 + Dsui_2870 0.26 -1.0
3,065,267 + Dsui_2870 0.38 +0.1
3,065,326 + Dsui_2870 0.45 +1.1
3,065,467 + Dsui_2870 0.60 -0.5
3,065,482 + Dsui_2870 0.61 +2.1
3,065,594 + Dsui_2870 0.73 -0.7
3,065,757 + +2.1
3,065,805 + +2.1
3,065,847 - -0.3
3,065,967 - +0.1
3,065,975 - -1.5
3,066,197 + +1.1
3,066,624 - Dsui_2871 0.80 +0.1
3,066,626 + +0.1
3,066,665 + Dsui_2871 0.85 +2.1
3,066,776 + +1.1
3,066,833 - -0.9
3,066,833 - -0.7

Or see this region's nucleotide sequence