Strain Fitness in Dechlorosoma suillum PS around Dsui_2781

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2779 and Dsui_2780 are separated by 13 nucleotidesDsui_2780 and Dsui_2781 are separated by 14 nucleotidesDsui_2781 and Dsui_2782 overlap by 4 nucleotides Dsui_2779: Dsui_2779 - PAS domain S-box, at 2,941,708 to 2,944,797 _2779 Dsui_2780: Dsui_2780 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,944,811 to 2,945,245 _2780 Dsui_2781: Dsui_2781 - PAS domain S-box, at 2,945,260 to 2,949,126 _2781 Dsui_2782: Dsui_2782 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 2,949,123 to 2,950,247 _2782 Position (kb) 2945 2946 2947 2948 2949 2950Strain fitness (log2 ratio) -1 0 1 2at 2944.509 kb on - strandat 2944.515 kb on + strandat 2944.756 kb on - strandat 2944.783 kb on + strandat 2944.791 kb on - strandat 2944.801 kb on - strandat 2945.170 kb on - strandat 2945.170 kb on - strand, within Dsui_2780at 2945.212 kb on - strandat 2945.462 kb on + strandat 2945.924 kb on - strandat 2945.968 kb on + strandat 2946.109 kb on + strandat 2946.319 kb on + strandat 2946.686 kb on + strand, within Dsui_2781at 2946.686 kb on + strand, within Dsui_2781at 2946.688 kb on - strand, within Dsui_2781at 2947.016 kb on - strandat 2947.410 kb on - strand, within Dsui_2781at 2947.509 kb on - strand, within Dsui_2781at 2947.681 kb on - strand, within Dsui_2781at 2947.681 kb on - strand, within Dsui_2781at 2947.700 kb on + strand, within Dsui_2781at 2947.700 kb on + strand, within Dsui_2781at 2947.702 kb on - strand, within Dsui_2781at 2948.789 kb on + strandat 2948.903 kb on + strandat 2949.114 kb on - strandat 2949.342 kb on - strandat 2949.696 kb on + strand, within Dsui_2782at 2949.721 kb on + strand, within Dsui_2782at 2949.778 kb on - strand, within Dsui_2782

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,944,509 - +1.1
2,944,515 + -0.2
2,944,756 - +2.1
2,944,783 + +0.5
2,944,791 - +0.1
2,944,801 - -0.2
2,945,170 - +0.1
2,945,170 - Dsui_2780 0.83 -0.5
2,945,212 - -0.1
2,945,462 + +0.5
2,945,924 - +1.1
2,945,968 + +0.1
2,946,109 + +1.1
2,946,319 + +2.1
2,946,686 + Dsui_2781 0.37 +0.3
2,946,686 + Dsui_2781 0.37 -0.9
2,946,688 - Dsui_2781 0.37 +1.3
2,947,016 - +1.1
2,947,410 - Dsui_2781 0.56 +0.7
2,947,509 - Dsui_2781 0.58 -1.6
2,947,681 - Dsui_2781 0.63 -0.6
2,947,681 - Dsui_2781 0.63 -0.5
2,947,700 + Dsui_2781 0.63 +0.8
2,947,700 + Dsui_2781 0.63 -1.4
2,947,702 - Dsui_2781 0.63 -0.2
2,948,789 + +0.1
2,948,903 + +0.1
2,949,114 - +2.1
2,949,342 - +2.1
2,949,696 + Dsui_2782 0.51 -0.1
2,949,721 + Dsui_2782 0.53 +0.1
2,949,778 - Dsui_2782 0.58 -0.4

Or see this region's nucleotide sequence