Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2777 and Dsui_2778 are separated by 142 nucleotides Dsui_2778 and Dsui_2779 are separated by 183 nucleotides Dsui_2779 and Dsui_2780 are separated by 13 nucleotides Dsui_2780 and Dsui_2781 are separated by 14 nucleotides
Dsui_2777: Dsui_2777 - aminoacyl-histidine dipeptidase, at 2,939,292 to 2,940,860
_2777
Dsui_2778: Dsui_2778 - isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase, at 2,941,003 to 2,941,524
_2778
Dsui_2779: Dsui_2779 - PAS domain S-box, at 2,941,708 to 2,944,797
_2779
Dsui_2780: Dsui_2780 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,944,811 to 2,945,245
_2780
Dsui_2781: Dsui_2781 - PAS domain S-box, at 2,945,260 to 2,949,126
_2781
Position (kb)
2941
2942
2943
2944
2945 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2940.957 kb on + strand at 2940.959 kb on + strand at 2941.192 kb on - strand at 2941.240 kb on - strand, within Dsui_2778 at 2941.316 kb on + strand, within Dsui_2778 at 2941.335 kb on + strand, within Dsui_2778 at 2941.352 kb on + strand, within Dsui_2778 at 2941.683 kb on - strand at 2941.684 kb on - strand at 2941.769 kb on + strand at 2941.793 kb on + strand at 2941.799 kb on + strand at 2941.886 kb on + strand at 2942.286 kb on - strand at 2942.336 kb on - strand, within Dsui_2779 at 2942.346 kb on - strand at 2942.418 kb on + strand at 2942.633 kb on - strand at 2942.848 kb on + strand at 2943.079 kb on - strand at 2943.259 kb on + strand at 2943.363 kb on + strand at 2943.755 kb on + strand, within Dsui_2779 at 2944.241 kb on - strand at 2944.509 kb on - strand at 2944.515 kb on + strand at 2944.756 kb on - strand at 2944.783 kb on + strand at 2944.791 kb on - strand at 2944.801 kb on - strand at 2945.170 kb on - strand at 2945.170 kb on - strand, within Dsui_2780 at 2945.212 kb on - strand at 2945.462 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,940,957 + -0.9 2,940,959 + +1.1 2,941,192 - +2.1 2,941,240 - Dsui_2778 0.45 +0.4 2,941,316 + Dsui_2778 0.60 +0.5 2,941,335 + Dsui_2778 0.64 +0.3 2,941,352 + Dsui_2778 0.67 +0.1 2,941,683 - -0.2 2,941,684 - +0.7 2,941,769 + -2.1 2,941,793 + +1.5 2,941,799 + -0.2 2,941,886 + +0.8 2,942,286 - +0.5 2,942,336 - Dsui_2779 0.20 -2.0 2,942,346 - +2.1 2,942,418 + +2.1 2,942,633 - +0.1 2,942,848 + -0.7 2,943,079 - +0.1 2,943,259 + -0.5 2,943,363 + +1.5 2,943,755 + Dsui_2779 0.66 -1.7 2,944,241 - +0.8 2,944,509 - +1.1 2,944,515 + -0.2 2,944,756 - +2.1 2,944,783 + +0.5 2,944,791 - +0.1 2,944,801 - -0.2 2,945,170 - +0.1 2,945,170 - Dsui_2780 0.83 -0.5 2,945,212 - -0.1 2,945,462 + +0.5
Or see this region's nucleotide sequence