Strain Fitness in Dechlorosoma suillum PS around Dsui_2687

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2686 and Dsui_2687 are separated by 2 nucleotidesDsui_2687 and Dsui_2688 overlap by 4 nucleotides Dsui_2686: Dsui_2686 - outer membrane protein assembly complex, YaeT protein, at 2,836,954 to 2,839,248 _2686 Dsui_2687: Dsui_2687 - RIP metalloprotease RseP, at 2,839,251 to 2,840,651 _2687 Dsui_2688: Dsui_2688 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 2,840,648 to 2,841,832 _2688 Position (kb) 2839 2840 2841Strain fitness (log2 ratio) -3 -2 -1 0 1at 2839.348 kb on - strandat 2839.358 kb on - strandat 2839.358 kb on - strandat 2839.407 kb on + strandat 2839.415 kb on - strand, within Dsui_2687at 2839.415 kb on - strand, within Dsui_2687at 2839.438 kb on - strand, within Dsui_2687at 2839.532 kb on - strand, within Dsui_2687at 2839.571 kb on - strand, within Dsui_2687at 2839.632 kb on - strand, within Dsui_2687at 2839.651 kb on - strand, within Dsui_2687at 2839.688 kb on - strand, within Dsui_2687at 2839.688 kb on - strand, within Dsui_2687at 2839.688 kb on - strand, within Dsui_2687at 2839.693 kb on - strand, within Dsui_2687at 2840.111 kb on - strand, within Dsui_2687at 2840.266 kb on - strand, within Dsui_2687at 2840.499 kb on - strand, within Dsui_2687at 2840.594 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,839,348 - -2.7
2,839,358 - -1.5
2,839,358 - -2.3
2,839,407 + +1.1
2,839,415 - Dsui_2687 0.12 -1.5
2,839,415 - Dsui_2687 0.12 -2.6
2,839,438 - Dsui_2687 0.13 +0.1
2,839,532 - Dsui_2687 0.20 -0.9
2,839,571 - Dsui_2687 0.23 -2.4
2,839,632 - Dsui_2687 0.27 -1.8
2,839,651 - Dsui_2687 0.29 -1.4
2,839,688 - Dsui_2687 0.31 +0.2
2,839,688 - Dsui_2687 0.31 -2.3
2,839,688 - Dsui_2687 0.31 -2.1
2,839,693 - Dsui_2687 0.32 -1.0
2,840,111 - Dsui_2687 0.61 -2.3
2,840,266 - Dsui_2687 0.72 -3.4
2,840,499 - Dsui_2687 0.89 -2.0
2,840,594 - -2.3

Or see this region's nucleotide sequence