Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2678 and Dsui_2679 are separated by 117 nucleotides Dsui_2679 and Dsui_2680 are separated by 3 nucleotides Dsui_2680 and Dsui_2681 overlap by 20 nucleotides
Dsui_2678: Dsui_2678 - hypothetical protein, at 2,830,682 to 2,831,524
_2678
Dsui_2679: Dsui_2679 - rRNA methylase, at 2,831,642 to 2,832,418
_2679
Dsui_2680: Dsui_2680 - ribonuclease HII, at 2,832,422 to 2,833,018
_2680
Dsui_2681: Dsui_2681 - lipid-A-disaccharide synthase, at 2,832,999 to 2,834,186
_2681
Position (kb)
2832
2833
2834 Strain fitness (log2 ratio)
-2
-1
0
1 at 2831.442 kb on + strand at 2831.442 kb on + strand at 2831.450 kb on - strand at 2831.540 kb on + strand at 2831.628 kb on - strand at 2831.703 kb on - strand at 2831.704 kb on - strand at 2831.732 kb on - strand, within Dsui_2679 at 2831.795 kb on - strand, within Dsui_2679 at 2831.889 kb on + strand at 2831.961 kb on + strand, within Dsui_2679 at 2831.969 kb on - strand, within Dsui_2679 at 2831.974 kb on - strand, within Dsui_2679 at 2832.060 kb on + strand, within Dsui_2679 at 2832.062 kb on + strand, within Dsui_2679 at 2832.114 kb on + strand, within Dsui_2679 at 2832.179 kb on + strand, within Dsui_2679 at 2832.179 kb on + strand, within Dsui_2679 at 2832.187 kb on - strand, within Dsui_2679 at 2832.201 kb on - strand, within Dsui_2679 at 2832.234 kb on + strand, within Dsui_2679 at 2832.247 kb on - strand, within Dsui_2679 at 2832.347 kb on + strand at 2832.420 kb on + strand at 2832.420 kb on + strand at 2832.428 kb on - strand at 2832.443 kb on - strand at 2832.460 kb on + strand at 2832.492 kb on - strand, within Dsui_2680 at 2832.523 kb on + strand, within Dsui_2680 at 2832.544 kb on + strand, within Dsui_2680 at 2832.585 kb on - strand, within Dsui_2680 at 2832.611 kb on - strand, within Dsui_2680 at 2832.651 kb on + strand, within Dsui_2680 at 2832.659 kb on - strand, within Dsui_2680 at 2832.814 kb on - strand, within Dsui_2680 at 2832.859 kb on - strand, within Dsui_2680 at 2832.911 kb on - strand, within Dsui_2680
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,831,442 + -1.4 2,831,442 + -0.9 2,831,450 - -2.0 2,831,540 + -0.6 2,831,628 - +0.3 2,831,703 - -0.6 2,831,704 - -0.0 2,831,732 - Dsui_2679 0.12 -0.6 2,831,795 - Dsui_2679 0.20 +0.2 2,831,889 + +1.1 2,831,961 + Dsui_2679 0.41 -1.2 2,831,969 - Dsui_2679 0.42 -0.0 2,831,974 - Dsui_2679 0.43 +0.3 2,832,060 + Dsui_2679 0.54 -0.6 2,832,062 + Dsui_2679 0.54 -0.3 2,832,114 + Dsui_2679 0.61 -0.6 2,832,179 + Dsui_2679 0.69 -2.7 2,832,179 + Dsui_2679 0.69 -0.2 2,832,187 - Dsui_2679 0.70 -1.0 2,832,201 - Dsui_2679 0.72 +0.1 2,832,234 + Dsui_2679 0.76 +0.1 2,832,247 - Dsui_2679 0.78 -0.5 2,832,347 + -1.0 2,832,420 + -0.5 2,832,420 + -1.1 2,832,428 - +0.1 2,832,443 - -0.2 2,832,460 + -0.5 2,832,492 - Dsui_2680 0.12 -0.7 2,832,523 + Dsui_2680 0.17 -0.7 2,832,544 + Dsui_2680 0.20 -1.4 2,832,585 - Dsui_2680 0.27 +0.2 2,832,611 - Dsui_2680 0.32 -0.5 2,832,651 + Dsui_2680 0.38 -0.7 2,832,659 - Dsui_2680 0.40 +0.4 2,832,814 - Dsui_2680 0.66 -0.7 2,832,859 - Dsui_2680 0.73 -0.1 2,832,911 - Dsui_2680 0.82 +0.4
Or see this region's nucleotide sequence