Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2483 and Dsui_2484 are separated by 28 nucleotides Dsui_2484 and Dsui_2485 are separated by 33 nucleotides Dsui_2485 and Dsui_2486 overlap by 4 nucleotides
Dsui_2483: Dsui_2483 - methylase involved in ubiquinone/menaquinone biosynthesis, at 2,632,983 to 2,633,711
_2483
Dsui_2484: Dsui_2484 - hydroxyacylglutathione hydrolase, at 2,633,740 to 2,634,543
_2484
Dsui_2485: Dsui_2485 - response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain, at 2,634,577 to 2,634,942
_2485
Dsui_2486: Dsui_2486 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,634,939 to 2,635,901
_2486
Position (kb)
2634
2635 Strain fitness (log2 ratio)
-2
-1
0
1 at 2633.732 kb on - strand at 2633.755 kb on - strand at 2633.758 kb on - strand at 2633.775 kb on - strand at 2633.829 kb on - strand, within Dsui_2484 at 2634.129 kb on + strand, within Dsui_2484 at 2634.142 kb on + strand, within Dsui_2484 at 2634.379 kb on - strand, within Dsui_2484 at 2634.404 kb on + strand, within Dsui_2484 at 2634.515 kb on + strand at 2634.537 kb on + strand at 2634.611 kb on + strand at 2634.656 kb on - strand, within Dsui_2485 at 2634.659 kb on + strand, within Dsui_2485 at 2634.708 kb on + strand, within Dsui_2485 at 2634.716 kb on - strand, within Dsui_2485 at 2634.740 kb on - strand, within Dsui_2485 at 2634.779 kb on - strand, within Dsui_2485 at 2635.082 kb on + strand, within Dsui_2486 at 2635.261 kb on + strand, within Dsui_2486 at 2635.308 kb on - strand, within Dsui_2486 at 2635.313 kb on - strand, within Dsui_2486 at 2635.493 kb on + strand, within Dsui_2486 at 2635.517 kb on + strand, within Dsui_2486 at 2635.550 kb on - strand, within Dsui_2486 at 2635.602 kb on + strand, within Dsui_2486 at 2635.726 kb on - strand, within Dsui_2486 at 2635.728 kb on - strand, within Dsui_2486 at 2635.765 kb on - strand, within Dsui_2486 at 2635.785 kb on - strand, within Dsui_2486 at 2635.812 kb on - strand at 2635.869 kb on + strand at 2635.878 kb on - strand at 2635.894 kb on - strand at 2635.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,633,732 - -0.3 2,633,755 - +0.1 2,633,758 - -0.2 2,633,775 - +0.0 2,633,829 - Dsui_2484 0.11 -0.8 2,634,129 + Dsui_2484 0.48 +0.5 2,634,142 + Dsui_2484 0.50 -2.1 2,634,379 - Dsui_2484 0.79 -0.9 2,634,404 + Dsui_2484 0.83 +0.4 2,634,515 + -0.2 2,634,537 + +0.8 2,634,611 + +1.3 2,634,656 - Dsui_2485 0.22 -0.7 2,634,659 + Dsui_2485 0.22 -0.8 2,634,708 + Dsui_2485 0.36 -0.5 2,634,716 - Dsui_2485 0.38 -0.4 2,634,740 - Dsui_2485 0.45 -0.6 2,634,779 - Dsui_2485 0.55 -0.6 2,635,082 + Dsui_2486 0.15 -1.0 2,635,261 + Dsui_2486 0.33 +0.2 2,635,308 - Dsui_2486 0.38 -0.0 2,635,313 - Dsui_2486 0.39 +0.1 2,635,493 + Dsui_2486 0.58 +1.0 2,635,517 + Dsui_2486 0.60 +0.2 2,635,550 - Dsui_2486 0.63 -0.3 2,635,602 + Dsui_2486 0.69 -1.1 2,635,726 - Dsui_2486 0.82 -0.3 2,635,728 - Dsui_2486 0.82 +0.1 2,635,765 - Dsui_2486 0.86 -0.1 2,635,785 - Dsui_2486 0.88 -0.8 2,635,812 - -0.1 2,635,869 + -0.6 2,635,878 - -0.2 2,635,894 - +0.5 2,635,924 - +0.6
Or see this region's nucleotide sequence