Strain Fitness in Dechlorosoma suillum PS around Dsui_2485

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2483 and Dsui_2484 are separated by 28 nucleotidesDsui_2484 and Dsui_2485 are separated by 33 nucleotidesDsui_2485 and Dsui_2486 overlap by 4 nucleotides Dsui_2483: Dsui_2483 - methylase involved in ubiquinone/menaquinone biosynthesis, at 2,632,983 to 2,633,711 _2483 Dsui_2484: Dsui_2484 - hydroxyacylglutathione hydrolase, at 2,633,740 to 2,634,543 _2484 Dsui_2485: Dsui_2485 - response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain, at 2,634,577 to 2,634,942 _2485 Dsui_2486: Dsui_2486 - diguanylate cyclase (GGDEF) domain-containing protein, at 2,634,939 to 2,635,901 _2486 Position (kb) 2634 2635Strain fitness (log2 ratio) -2 -1 0 1at 2633.732 kb on - strandat 2633.755 kb on - strandat 2633.758 kb on - strandat 2633.775 kb on - strandat 2633.829 kb on - strand, within Dsui_2484at 2634.129 kb on + strand, within Dsui_2484at 2634.142 kb on + strand, within Dsui_2484at 2634.379 kb on - strand, within Dsui_2484at 2634.404 kb on + strand, within Dsui_2484at 2634.515 kb on + strandat 2634.537 kb on + strandat 2634.611 kb on + strandat 2634.656 kb on - strand, within Dsui_2485at 2634.659 kb on + strand, within Dsui_2485at 2634.708 kb on + strand, within Dsui_2485at 2634.716 kb on - strand, within Dsui_2485at 2634.740 kb on - strand, within Dsui_2485at 2634.779 kb on - strand, within Dsui_2485at 2635.082 kb on + strand, within Dsui_2486at 2635.261 kb on + strand, within Dsui_2486at 2635.308 kb on - strand, within Dsui_2486at 2635.313 kb on - strand, within Dsui_2486at 2635.493 kb on + strand, within Dsui_2486at 2635.517 kb on + strand, within Dsui_2486at 2635.550 kb on - strand, within Dsui_2486at 2635.602 kb on + strand, within Dsui_2486at 2635.726 kb on - strand, within Dsui_2486at 2635.728 kb on - strand, within Dsui_2486at 2635.765 kb on - strand, within Dsui_2486at 2635.785 kb on - strand, within Dsui_2486at 2635.812 kb on - strandat 2635.869 kb on + strandat 2635.878 kb on - strandat 2635.894 kb on - strandat 2635.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,633,732 - -0.3
2,633,755 - +0.1
2,633,758 - -0.2
2,633,775 - +0.0
2,633,829 - Dsui_2484 0.11 -0.8
2,634,129 + Dsui_2484 0.48 +0.5
2,634,142 + Dsui_2484 0.50 -2.1
2,634,379 - Dsui_2484 0.79 -0.9
2,634,404 + Dsui_2484 0.83 +0.4
2,634,515 + -0.2
2,634,537 + +0.8
2,634,611 + +1.3
2,634,656 - Dsui_2485 0.22 -0.7
2,634,659 + Dsui_2485 0.22 -0.8
2,634,708 + Dsui_2485 0.36 -0.5
2,634,716 - Dsui_2485 0.38 -0.4
2,634,740 - Dsui_2485 0.45 -0.6
2,634,779 - Dsui_2485 0.55 -0.6
2,635,082 + Dsui_2486 0.15 -1.0
2,635,261 + Dsui_2486 0.33 +0.2
2,635,308 - Dsui_2486 0.38 -0.0
2,635,313 - Dsui_2486 0.39 +0.1
2,635,493 + Dsui_2486 0.58 +1.0
2,635,517 + Dsui_2486 0.60 +0.2
2,635,550 - Dsui_2486 0.63 -0.3
2,635,602 + Dsui_2486 0.69 -1.1
2,635,726 - Dsui_2486 0.82 -0.3
2,635,728 - Dsui_2486 0.82 +0.1
2,635,765 - Dsui_2486 0.86 -0.1
2,635,785 - Dsui_2486 0.88 -0.8
2,635,812 - -0.1
2,635,869 + -0.6
2,635,878 - -0.2
2,635,894 - +0.5
2,635,924 - +0.6

Or see this region's nucleotide sequence