Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2079 and Dsui_2080 overlap by 4 nucleotides Dsui_2080 and Dsui_2081 are separated by 6 nucleotides
Dsui_2079: Dsui_2079 - histidine kinase, at 2,198,910 to 2,200,745
_2079
Dsui_2080: Dsui_2080 - response regulator, at 2,200,742 to 2,201,386
_2080
Dsui_2081: Dsui_2081 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,201,393 to 2,202,961
_2081
Position (kb)
2200
2201
2202 Strain fitness (log2 ratio)
-1
0
1
2 at 2199.755 kb on + strand, within Dsui_2079 at 2199.786 kb on + strand at 2199.922 kb on + strand, within Dsui_2079 at 2199.955 kb on + strand, within Dsui_2079 at 2199.955 kb on + strand, within Dsui_2079 at 2199.967 kb on + strand, within Dsui_2079 at 2200.072 kb on - strand at 2200.303 kb on + strand at 2200.313 kb on + strand, within Dsui_2079 at 2200.495 kb on - strand, within Dsui_2079 at 2200.541 kb on + strand, within Dsui_2079 at 2200.546 kb on + strand at 2200.554 kb on + strand, within Dsui_2079 at 2200.606 kb on + strand at 2200.608 kb on - strand at 2200.681 kb on + strand at 2200.692 kb on + strand at 2200.814 kb on - strand at 2200.827 kb on - strand at 2200.827 kb on - strand, within Dsui_2080 at 2200.841 kb on + strand, within Dsui_2080 at 2200.971 kb on - strand, within Dsui_2080 at 2201.044 kb on + strand, within Dsui_2080 at 2201.081 kb on + strand, within Dsui_2080 at 2201.109 kb on - strand at 2201.228 kb on + strand at 2201.293 kb on - strand, within Dsui_2080 at 2201.687 kb on - strand, within Dsui_2081 at 2201.692 kb on - strand, within Dsui_2081 at 2201.735 kb on - strand, within Dsui_2081 at 2201.806 kb on + strand at 2201.872 kb on + strand, within Dsui_2081 at 2201.916 kb on - strand at 2201.997 kb on + strand, within Dsui_2081 at 2202.071 kb on + strand at 2202.083 kb on + strand at 2202.083 kb on + strand, within Dsui_2081 at 2202.191 kb on - strand, within Dsui_2081 at 2202.191 kb on - strand, within Dsui_2081 at 2202.223 kb on + strand at 2202.231 kb on - strand, within Dsui_2081 at 2202.255 kb on + strand, within Dsui_2081 at 2202.290 kb on + strand at 2202.319 kb on - strand, within Dsui_2081 at 2202.342 kb on - strand, within Dsui_2081 at 2202.354 kb on + strand, within Dsui_2081
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,199,755 + Dsui_2079 0.46 +1.1 2,199,786 + +1.1 2,199,922 + Dsui_2079 0.55 -0.0 2,199,955 + Dsui_2079 0.57 -0.5 2,199,955 + Dsui_2079 0.57 -1.0 2,199,967 + Dsui_2079 0.58 +0.3 2,200,072 - +0.1 2,200,303 + -0.2 2,200,313 + Dsui_2079 0.76 -0.6 2,200,495 - Dsui_2079 0.86 +0.3 2,200,541 + Dsui_2079 0.89 -0.4 2,200,546 + -0.7 2,200,554 + Dsui_2079 0.90 +0.8 2,200,606 + +0.0 2,200,608 - +0.6 2,200,681 + -0.4 2,200,692 + -0.9 2,200,814 - +0.6 2,200,827 - +2.1 2,200,827 - Dsui_2080 0.13 +0.6 2,200,841 + Dsui_2080 0.15 +1.1 2,200,971 - Dsui_2080 0.36 -1.3 2,201,044 + Dsui_2080 0.47 -0.9 2,201,081 + Dsui_2080 0.53 +0.6 2,201,109 - +0.8 2,201,228 + +0.1 2,201,293 - Dsui_2080 0.85 -0.4 2,201,687 - Dsui_2081 0.19 +0.7 2,201,692 - Dsui_2081 0.19 -0.8 2,201,735 - Dsui_2081 0.22 +0.1 2,201,806 + +0.6 2,201,872 + Dsui_2081 0.31 -0.7 2,201,916 - +2.7 2,201,997 + Dsui_2081 0.38 +0.1 2,202,071 + -0.4 2,202,083 + +0.1 2,202,083 + Dsui_2081 0.44 +0.0 2,202,191 - Dsui_2081 0.51 -1.3 2,202,191 - Dsui_2081 0.51 -1.7 2,202,223 + +2.1 2,202,231 - Dsui_2081 0.53 -1.1 2,202,255 + Dsui_2081 0.55 -0.2 2,202,290 + -0.3 2,202,319 - Dsui_2081 0.59 -0.2 2,202,342 - Dsui_2081 0.60 -0.2 2,202,354 + Dsui_2081 0.61 -0.4
Or see this region's nucleotide sequence