Strain Fitness in Dechlorosoma suillum PS around Dsui_1935

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1933 and Dsui_1934 overlap by 8 nucleotidesDsui_1934 and Dsui_1935 are separated by 79 nucleotidesDsui_1935 and Dsui_1936 are separated by 82 nucleotides Dsui_1933: Dsui_1933 - 2-phosphoglycolate phosphatase, at 2,042,979 to 2,043,638 _1933 Dsui_1934: Dsui_1934 - ubiquinone biosynthesis O-methyltransferase, at 2,043,631 to 2,044,329 _1934 Dsui_1935: Dsui_1935 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 2,044,409 to 2,045,047 _1935 Dsui_1936: Dsui_1936 - cytosine deaminase-like metal-dependent hydrolase, at 2,045,130 to 2,046,464 _1936 Position (kb) 2044 2045 2046Strain fitness (log2 ratio) -1 0 1 2at 2043.419 kb on - strand, within Dsui_1933at 2043.444 kb on + strand, within Dsui_1933at 2043.504 kb on + strand, within Dsui_1933at 2043.505 kb on + strand, within Dsui_1933at 2043.520 kb on - strand, within Dsui_1933at 2043.522 kb on + strand, within Dsui_1933at 2043.530 kb on - strand, within Dsui_1933at 2043.572 kb on - strand, within Dsui_1933at 2043.574 kb on + strandat 2043.618 kb on + strandat 2043.647 kb on + strandat 2043.647 kb on + strandat 2044.348 kb on - strandat 2044.355 kb on - strandat 2044.370 kb on - strandat 2045.060 kb on - strandat 2045.196 kb on - strandat 2045.204 kb on - strandat 2045.230 kb on + strandat 2045.230 kb on + strandat 2045.238 kb on - strandat 2045.238 kb on - strandat 2045.257 kb on - strandat 2045.293 kb on - strand, within Dsui_1936at 2045.326 kb on + strand, within Dsui_1936at 2045.410 kb on - strand, within Dsui_1936at 2045.435 kb on + strand, within Dsui_1936at 2045.439 kb on - strand, within Dsui_1936at 2045.576 kb on + strandat 2045.614 kb on - strand, within Dsui_1936at 2045.616 kb on - strand, within Dsui_1936at 2045.626 kb on - strand, within Dsui_1936at 2045.634 kb on - strand, within Dsui_1936at 2045.701 kb on - strand, within Dsui_1936at 2045.708 kb on + strand, within Dsui_1936at 2045.798 kb on - strand, within Dsui_1936at 2045.852 kb on - strand, within Dsui_1936at 2045.882 kb on + strand, within Dsui_1936at 2045.889 kb on + strand, within Dsui_1936at 2045.890 kb on - strand, within Dsui_1936at 2045.923 kb on - strand, within Dsui_1936at 2045.994 kb on + strandat 2046.002 kb on - strand, within Dsui_1936at 2046.002 kb on - strand, within Dsui_1936

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,043,419 - Dsui_1933 0.67 +0.1
2,043,444 + Dsui_1933 0.70 -0.1
2,043,504 + Dsui_1933 0.80 +0.4
2,043,505 + Dsui_1933 0.80 -0.5
2,043,520 - Dsui_1933 0.82 -0.7
2,043,522 + Dsui_1933 0.82 -0.4
2,043,530 - Dsui_1933 0.83 +0.5
2,043,572 - Dsui_1933 0.90 +0.7
2,043,574 + +2.4
2,043,618 + -0.5
2,043,647 + -1.5
2,043,647 + +0.2
2,044,348 - -0.2
2,044,355 - -0.0
2,044,370 - +0.1
2,045,060 - +0.6
2,045,196 - +0.6
2,045,204 - +0.7
2,045,230 + -0.6
2,045,230 + +1.2
2,045,238 - +1.0
2,045,238 - +0.6
2,045,257 - +0.5
2,045,293 - Dsui_1936 0.12 +0.2
2,045,326 + Dsui_1936 0.15 +0.2
2,045,410 - Dsui_1936 0.21 +0.3
2,045,435 + Dsui_1936 0.23 -1.0
2,045,439 - Dsui_1936 0.23 +0.5
2,045,576 + +1.6
2,045,614 - Dsui_1936 0.36 -0.4
2,045,616 - Dsui_1936 0.36 +0.2
2,045,626 - Dsui_1936 0.37 +0.1
2,045,634 - Dsui_1936 0.38 -0.9
2,045,701 - Dsui_1936 0.43 -0.9
2,045,708 + Dsui_1936 0.43 +0.2
2,045,798 - Dsui_1936 0.50 +0.4
2,045,852 - Dsui_1936 0.54 +1.2
2,045,882 + Dsui_1936 0.56 -0.3
2,045,889 + Dsui_1936 0.57 +1.8
2,045,890 - Dsui_1936 0.57 -0.1
2,045,923 - Dsui_1936 0.59 -1.1
2,045,994 + +1.8
2,046,002 - Dsui_1936 0.65 -0.2
2,046,002 - Dsui_1936 0.65 +0.8

Or see this region's nucleotide sequence