Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1933 and Dsui_1934 overlap by 8 nucleotides Dsui_1934 and Dsui_1935 are separated by 79 nucleotides Dsui_1935 and Dsui_1936 are separated by 82 nucleotides
Dsui_1933: Dsui_1933 - 2-phosphoglycolate phosphatase, at 2,042,979 to 2,043,638
_1933
Dsui_1934: Dsui_1934 - ubiquinone biosynthesis O-methyltransferase, at 2,043,631 to 2,044,329
_1934
Dsui_1935: Dsui_1935 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 2,044,409 to 2,045,047
_1935
Dsui_1936: Dsui_1936 - cytosine deaminase-like metal-dependent hydrolase, at 2,045,130 to 2,046,464
_1936
Position (kb)
2044
2045
2046 Strain fitness (log2 ratio)
-1
0
1
2 at 2043.419 kb on - strand, within Dsui_1933 at 2043.444 kb on + strand, within Dsui_1933 at 2043.504 kb on + strand, within Dsui_1933 at 2043.505 kb on + strand, within Dsui_1933 at 2043.520 kb on - strand, within Dsui_1933 at 2043.522 kb on + strand, within Dsui_1933 at 2043.530 kb on - strand, within Dsui_1933 at 2043.572 kb on - strand, within Dsui_1933 at 2043.574 kb on + strand at 2043.618 kb on + strand at 2043.647 kb on + strand at 2043.647 kb on + strand at 2044.348 kb on - strand at 2044.355 kb on - strand at 2044.370 kb on - strand at 2045.060 kb on - strand at 2045.196 kb on - strand at 2045.204 kb on - strand at 2045.230 kb on + strand at 2045.230 kb on + strand at 2045.238 kb on - strand at 2045.238 kb on - strand at 2045.257 kb on - strand at 2045.293 kb on - strand, within Dsui_1936 at 2045.326 kb on + strand, within Dsui_1936 at 2045.410 kb on - strand, within Dsui_1936 at 2045.435 kb on + strand, within Dsui_1936 at 2045.439 kb on - strand, within Dsui_1936 at 2045.576 kb on + strand at 2045.614 kb on - strand, within Dsui_1936 at 2045.616 kb on - strand, within Dsui_1936 at 2045.626 kb on - strand, within Dsui_1936 at 2045.634 kb on - strand, within Dsui_1936 at 2045.701 kb on - strand, within Dsui_1936 at 2045.708 kb on + strand, within Dsui_1936 at 2045.798 kb on - strand, within Dsui_1936 at 2045.852 kb on - strand, within Dsui_1936 at 2045.882 kb on + strand, within Dsui_1936 at 2045.889 kb on + strand, within Dsui_1936 at 2045.890 kb on - strand, within Dsui_1936 at 2045.923 kb on - strand, within Dsui_1936 at 2045.994 kb on + strand at 2046.002 kb on - strand, within Dsui_1936 at 2046.002 kb on - strand, within Dsui_1936
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,043,419 - Dsui_1933 0.67 +0.1 2,043,444 + Dsui_1933 0.70 -0.1 2,043,504 + Dsui_1933 0.80 +0.4 2,043,505 + Dsui_1933 0.80 -0.5 2,043,520 - Dsui_1933 0.82 -0.7 2,043,522 + Dsui_1933 0.82 -0.4 2,043,530 - Dsui_1933 0.83 +0.5 2,043,572 - Dsui_1933 0.90 +0.7 2,043,574 + +2.4 2,043,618 + -0.5 2,043,647 + -1.5 2,043,647 + +0.2 2,044,348 - -0.2 2,044,355 - -0.0 2,044,370 - +0.1 2,045,060 - +0.6 2,045,196 - +0.6 2,045,204 - +0.7 2,045,230 + -0.6 2,045,230 + +1.2 2,045,238 - +1.0 2,045,238 - +0.6 2,045,257 - +0.5 2,045,293 - Dsui_1936 0.12 +0.2 2,045,326 + Dsui_1936 0.15 +0.2 2,045,410 - Dsui_1936 0.21 +0.3 2,045,435 + Dsui_1936 0.23 -1.0 2,045,439 - Dsui_1936 0.23 +0.5 2,045,576 + +1.6 2,045,614 - Dsui_1936 0.36 -0.4 2,045,616 - Dsui_1936 0.36 +0.2 2,045,626 - Dsui_1936 0.37 +0.1 2,045,634 - Dsui_1936 0.38 -0.9 2,045,701 - Dsui_1936 0.43 -0.9 2,045,708 + Dsui_1936 0.43 +0.2 2,045,798 - Dsui_1936 0.50 +0.4 2,045,852 - Dsui_1936 0.54 +1.2 2,045,882 + Dsui_1936 0.56 -0.3 2,045,889 + Dsui_1936 0.57 +1.8 2,045,890 - Dsui_1936 0.57 -0.1 2,045,923 - Dsui_1936 0.59 -1.1 2,045,994 + +1.8 2,046,002 - Dsui_1936 0.65 -0.2 2,046,002 - Dsui_1936 0.65 +0.8
Or see this region's nucleotide sequence