Strain Fitness in Dechlorosoma suillum PS around Dsui_1872

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1871 and Dsui_1872 are separated by 29 nucleotidesDsui_1872 and Dsui_1873 are separated by 170 nucleotidesDsui_1873 and Dsui_1874 overlap by 1 nucleotides Dsui_1871: Dsui_1871 - hydrophobe/amphiphile efflux-1 (HAE1) family transporter, at 1,967,838 to 1,970,972 _1871 Dsui_1872: Dsui_1872 - RND family efflux transporter, MFP subunit, at 1,971,002 to 1,972,261 _1872 Dsui_1873: Dsui_1873 - transcriptional regulator, at 1,972,432 to 1,973,046 _1873 Dsui_1874: Dsui_1874 - hypothetical protein, at 1,973,046 to 1,973,378 _1874 Position (kb) 1971 1972 1973Strain fitness (log2 ratio) -1 0 1 2 3at 1970.056 kb on + strandat 1970.142 kb on - strand, within Dsui_1871at 1970.179 kb on + strand, within Dsui_1871at 1970.198 kb on + strandat 1970.264 kb on - strand, within Dsui_1871at 1970.306 kb on - strand, within Dsui_1871at 1970.385 kb on - strand, within Dsui_1871at 1970.390 kb on - strand, within Dsui_1871at 1970.426 kb on + strandat 1970.430 kb on - strand, within Dsui_1871at 1970.430 kb on - strand, within Dsui_1871at 1970.552 kb on - strand, within Dsui_1871at 1970.590 kb on + strand, within Dsui_1871at 1970.668 kb on - strandat 1970.678 kb on - strandat 1970.678 kb on - strandat 1970.687 kb on + strandat 1970.761 kb on + strandat 1970.769 kb on - strandat 1970.814 kb on - strandat 1970.860 kb on + strandat 1970.970 kb on + strandat 1971.245 kb on - strand, within Dsui_1872at 1971.341 kb on + strandat 1971.537 kb on - strand, within Dsui_1872at 1971.585 kb on + strand, within Dsui_1872at 1971.593 kb on - strandat 1971.593 kb on - strand, within Dsui_1872at 1971.615 kb on - strand, within Dsui_1872at 1971.665 kb on - strand, within Dsui_1872at 1971.669 kb on - strand, within Dsui_1872at 1971.677 kb on - strand, within Dsui_1872at 1971.679 kb on - strand, within Dsui_1872at 1971.759 kb on - strand, within Dsui_1872at 1971.765 kb on - strand, within Dsui_1872at 1971.783 kb on + strand, within Dsui_1872at 1971.797 kb on + strand, within Dsui_1872at 1971.914 kb on - strand, within Dsui_1872at 1971.914 kb on - strand, within Dsui_1872at 1971.928 kb on + strandat 1971.983 kb on - strand, within Dsui_1872at 1972.064 kb on - strand, within Dsui_1872at 1972.075 kb on + strand, within Dsui_1872at 1972.075 kb on + strandat 1972.089 kb on + strandat 1972.127 kb on - strand, within Dsui_1872at 1972.130 kb on + strand, within Dsui_1872at 1972.130 kb on + strandat 1972.153 kb on - strandat 1972.234 kb on - strandat 1972.239 kb on + strandat 1972.390 kb on - strandat 1972.548 kb on + strand, within Dsui_1873at 1972.556 kb on + strand, within Dsui_1873at 1972.595 kb on + strand, within Dsui_1873at 1972.597 kb on + strand, within Dsui_1873at 1972.739 kb on + strand, within Dsui_1873at 1972.859 kb on + strand, within Dsui_1873at 1972.925 kb on + strand, within Dsui_1873at 1973.055 kb on + strandat 1973.167 kb on + strand, within Dsui_1874at 1973.167 kb on + strand, within Dsui_1874at 1973.173 kb on + strand, within Dsui_1874at 1973.181 kb on - strand, within Dsui_1874at 1973.233 kb on - strand, within Dsui_1874

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,970,056 + +0.9
1,970,142 - Dsui_1871 0.73 -0.4
1,970,179 + Dsui_1871 0.75 -0.9
1,970,198 + +0.6
1,970,264 - Dsui_1871 0.77 -0.5
1,970,306 - Dsui_1871 0.79 +0.1
1,970,385 - Dsui_1871 0.81 +0.5
1,970,390 - Dsui_1871 0.81 -0.8
1,970,426 + -0.4
1,970,430 - Dsui_1871 0.83 +0.2
1,970,430 - Dsui_1871 0.83 +1.2
1,970,552 - Dsui_1871 0.87 -0.4
1,970,590 + Dsui_1871 0.88 +0.6
1,970,668 - -0.4
1,970,678 - -0.3
1,970,678 - +0.5
1,970,687 + +1.2
1,970,761 + +3.2
1,970,769 - -0.3
1,970,814 - -0.4
1,970,860 + +1.2
1,970,970 + -0.7
1,971,245 - Dsui_1872 0.19 -1.2
1,971,341 + +2.2
1,971,537 - Dsui_1872 0.42 -0.5
1,971,585 + Dsui_1872 0.46 +1.5
1,971,593 - +1.2
1,971,593 - Dsui_1872 0.47 +0.2
1,971,615 - Dsui_1872 0.49 -1.0
1,971,665 - Dsui_1872 0.53 -0.6
1,971,669 - Dsui_1872 0.53 -0.1
1,971,677 - Dsui_1872 0.54 +1.4
1,971,679 - Dsui_1872 0.54 -1.0
1,971,759 - Dsui_1872 0.60 -1.2
1,971,765 - Dsui_1872 0.61 +1.4
1,971,783 + Dsui_1872 0.62 -1.2
1,971,797 + Dsui_1872 0.63 +0.6
1,971,914 - Dsui_1872 0.72 -0.9
1,971,914 - Dsui_1872 0.72 -0.7
1,971,928 + +1.2
1,971,983 - Dsui_1872 0.78 -0.8
1,972,064 - Dsui_1872 0.84 +0.1
1,972,075 + Dsui_1872 0.85 -0.8
1,972,075 + -0.1
1,972,089 + +1.2
1,972,127 - Dsui_1872 0.89 -1.2
1,972,130 + Dsui_1872 0.90 -1.1
1,972,130 + +1.2
1,972,153 - -0.1
1,972,234 - -0.7
1,972,239 + +0.8
1,972,390 - +1.2
1,972,548 + Dsui_1873 0.19 +1.2
1,972,556 + Dsui_1873 0.20 +0.4
1,972,595 + Dsui_1873 0.27 +0.3
1,972,597 + Dsui_1873 0.27 +0.6
1,972,739 + Dsui_1873 0.50 +0.1
1,972,859 + Dsui_1873 0.69 -0.2
1,972,925 + Dsui_1873 0.80 +0.2
1,973,055 + -0.2
1,973,167 + Dsui_1874 0.36 -0.4
1,973,167 + Dsui_1874 0.36 +0.5
1,973,173 + Dsui_1874 0.38 -0.4
1,973,181 - Dsui_1874 0.41 +0.3
1,973,233 - Dsui_1874 0.56 -0.1

Or see this region's nucleotide sequence