Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1871 and Dsui_1872 are separated by 29 nucleotides Dsui_1872 and Dsui_1873 are separated by 170 nucleotides Dsui_1873 and Dsui_1874 overlap by 1 nucleotides
Dsui_1871: Dsui_1871 - hydrophobe/amphiphile efflux-1 (HAE1) family transporter, at 1,967,838 to 1,970,972
_1871
Dsui_1872: Dsui_1872 - RND family efflux transporter, MFP subunit, at 1,971,002 to 1,972,261
_1872
Dsui_1873: Dsui_1873 - transcriptional regulator, at 1,972,432 to 1,973,046
_1873
Dsui_1874: Dsui_1874 - hypothetical protein, at 1,973,046 to 1,973,378
_1874
Position (kb)
1971
1972
1973 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1970.056 kb on + strand at 1970.142 kb on - strand, within Dsui_1871 at 1970.179 kb on + strand, within Dsui_1871 at 1970.198 kb on + strand at 1970.264 kb on - strand, within Dsui_1871 at 1970.306 kb on - strand, within Dsui_1871 at 1970.385 kb on - strand, within Dsui_1871 at 1970.390 kb on - strand, within Dsui_1871 at 1970.426 kb on + strand at 1970.430 kb on - strand, within Dsui_1871 at 1970.430 kb on - strand, within Dsui_1871 at 1970.552 kb on - strand, within Dsui_1871 at 1970.590 kb on + strand, within Dsui_1871 at 1970.668 kb on - strand at 1970.678 kb on - strand at 1970.678 kb on - strand at 1970.687 kb on + strand at 1970.761 kb on + strand at 1970.769 kb on - strand at 1970.814 kb on - strand at 1970.860 kb on + strand at 1970.970 kb on + strand at 1971.245 kb on - strand, within Dsui_1872 at 1971.341 kb on + strand at 1971.537 kb on - strand, within Dsui_1872 at 1971.585 kb on + strand, within Dsui_1872 at 1971.593 kb on - strand at 1971.593 kb on - strand, within Dsui_1872 at 1971.615 kb on - strand, within Dsui_1872 at 1971.665 kb on - strand, within Dsui_1872 at 1971.669 kb on - strand, within Dsui_1872 at 1971.677 kb on - strand, within Dsui_1872 at 1971.679 kb on - strand, within Dsui_1872 at 1971.759 kb on - strand, within Dsui_1872 at 1971.765 kb on - strand, within Dsui_1872 at 1971.783 kb on + strand, within Dsui_1872 at 1971.797 kb on + strand, within Dsui_1872 at 1971.914 kb on - strand, within Dsui_1872 at 1971.914 kb on - strand, within Dsui_1872 at 1971.928 kb on + strand at 1971.983 kb on - strand, within Dsui_1872 at 1972.064 kb on - strand, within Dsui_1872 at 1972.075 kb on + strand, within Dsui_1872 at 1972.075 kb on + strand at 1972.089 kb on + strand at 1972.127 kb on - strand, within Dsui_1872 at 1972.130 kb on + strand, within Dsui_1872 at 1972.130 kb on + strand at 1972.153 kb on - strand at 1972.234 kb on - strand at 1972.239 kb on + strand at 1972.390 kb on - strand at 1972.548 kb on + strand, within Dsui_1873 at 1972.556 kb on + strand, within Dsui_1873 at 1972.595 kb on + strand, within Dsui_1873 at 1972.597 kb on + strand, within Dsui_1873 at 1972.739 kb on + strand, within Dsui_1873 at 1972.859 kb on + strand, within Dsui_1873 at 1972.925 kb on + strand, within Dsui_1873 at 1973.055 kb on + strand at 1973.167 kb on + strand, within Dsui_1874 at 1973.167 kb on + strand, within Dsui_1874 at 1973.173 kb on + strand, within Dsui_1874 at 1973.181 kb on - strand, within Dsui_1874 at 1973.233 kb on - strand, within Dsui_1874
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,970,056 + +0.9 1,970,142 - Dsui_1871 0.73 -0.4 1,970,179 + Dsui_1871 0.75 -0.9 1,970,198 + +0.6 1,970,264 - Dsui_1871 0.77 -0.5 1,970,306 - Dsui_1871 0.79 +0.1 1,970,385 - Dsui_1871 0.81 +0.5 1,970,390 - Dsui_1871 0.81 -0.8 1,970,426 + -0.4 1,970,430 - Dsui_1871 0.83 +0.2 1,970,430 - Dsui_1871 0.83 +1.2 1,970,552 - Dsui_1871 0.87 -0.4 1,970,590 + Dsui_1871 0.88 +0.6 1,970,668 - -0.4 1,970,678 - -0.3 1,970,678 - +0.5 1,970,687 + +1.2 1,970,761 + +3.2 1,970,769 - -0.3 1,970,814 - -0.4 1,970,860 + +1.2 1,970,970 + -0.7 1,971,245 - Dsui_1872 0.19 -1.2 1,971,341 + +2.2 1,971,537 - Dsui_1872 0.42 -0.5 1,971,585 + Dsui_1872 0.46 +1.5 1,971,593 - +1.2 1,971,593 - Dsui_1872 0.47 +0.2 1,971,615 - Dsui_1872 0.49 -1.0 1,971,665 - Dsui_1872 0.53 -0.6 1,971,669 - Dsui_1872 0.53 -0.1 1,971,677 - Dsui_1872 0.54 +1.4 1,971,679 - Dsui_1872 0.54 -1.0 1,971,759 - Dsui_1872 0.60 -1.2 1,971,765 - Dsui_1872 0.61 +1.4 1,971,783 + Dsui_1872 0.62 -1.2 1,971,797 + Dsui_1872 0.63 +0.6 1,971,914 - Dsui_1872 0.72 -0.9 1,971,914 - Dsui_1872 0.72 -0.7 1,971,928 + +1.2 1,971,983 - Dsui_1872 0.78 -0.8 1,972,064 - Dsui_1872 0.84 +0.1 1,972,075 + Dsui_1872 0.85 -0.8 1,972,075 + -0.1 1,972,089 + +1.2 1,972,127 - Dsui_1872 0.89 -1.2 1,972,130 + Dsui_1872 0.90 -1.1 1,972,130 + +1.2 1,972,153 - -0.1 1,972,234 - -0.7 1,972,239 + +0.8 1,972,390 - +1.2 1,972,548 + Dsui_1873 0.19 +1.2 1,972,556 + Dsui_1873 0.20 +0.4 1,972,595 + Dsui_1873 0.27 +0.3 1,972,597 + Dsui_1873 0.27 +0.6 1,972,739 + Dsui_1873 0.50 +0.1 1,972,859 + Dsui_1873 0.69 -0.2 1,972,925 + Dsui_1873 0.80 +0.2 1,973,055 + -0.2 1,973,167 + Dsui_1874 0.36 -0.4 1,973,167 + Dsui_1874 0.36 +0.5 1,973,173 + Dsui_1874 0.38 -0.4 1,973,181 - Dsui_1874 0.41 +0.3 1,973,233 - Dsui_1874 0.56 -0.1
Or see this region's nucleotide sequence