Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1603 and Dsui_1604 are separated by 275 nucleotides Dsui_1604 and Dsui_1605 are separated by 188 nucleotides
Dsui_1603: Dsui_1603 - phosphoenolpyruvate carboxylase, at 1,684,012 to 1,686,819
_1603
Dsui_1604: Dsui_1604 - putative membrane protein, at 1,687,095 to 1,687,727
_1604
Dsui_1605: Dsui_1605 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 1,687,916 to 1,689,505
_1605
Position (kb)
1687
1688 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1686.108 kb on + strand, within Dsui_1603 at 1686.175 kb on + strand at 1686.404 kb on + strand, within Dsui_1603 at 1686.686 kb on + strand at 1686.885 kb on - strand at 1686.900 kb on + strand at 1686.905 kb on + strand at 1686.905 kb on + strand at 1687.038 kb on + strand at 1687.046 kb on - strand at 1687.126 kb on + strand at 1687.158 kb on - strand at 1687.183 kb on - strand, within Dsui_1604 at 1687.195 kb on + strand, within Dsui_1604 at 1687.204 kb on - strand, within Dsui_1604 at 1687.247 kb on + strand, within Dsui_1604 at 1687.268 kb on + strand, within Dsui_1604 at 1687.338 kb on - strand, within Dsui_1604 at 1687.340 kb on + strand, within Dsui_1604 at 1687.348 kb on - strand at 1687.356 kb on + strand, within Dsui_1604 at 1687.375 kb on + strand, within Dsui_1604 at 1687.416 kb on - strand, within Dsui_1604 at 1687.557 kb on - strand, within Dsui_1604 at 1687.577 kb on + strand, within Dsui_1604 at 1687.610 kb on - strand, within Dsui_1604 at 1687.667 kb on - strand at 1688.049 kb on + strand at 1688.062 kb on - strand at 1688.074 kb on + strand at 1688.120 kb on - strand, within Dsui_1605 at 1688.131 kb on + strand, within Dsui_1605 at 1688.182 kb on + strand, within Dsui_1605 at 1688.279 kb on - strand at 1688.491 kb on + strand at 1688.491 kb on + strand at 1688.491 kb on + strand at 1688.491 kb on + strand at 1688.504 kb on + strand, within Dsui_1605 at 1688.509 kb on + strand, within Dsui_1605 at 1688.584 kb on + strand at 1688.587 kb on - strand, within Dsui_1605 at 1688.652 kb on + strand, within Dsui_1605 at 1688.652 kb on + strand, within Dsui_1605 at 1688.660 kb on - strand, within Dsui_1605 at 1688.660 kb on - strand, within Dsui_1605 at 1688.665 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,686,108 + Dsui_1603 0.75 -0.0 1,686,175 + +1.1 1,686,404 + Dsui_1603 0.85 -1.0 1,686,686 + +2.1 1,686,885 - +1.1 1,686,900 + -1.1 1,686,905 + -0.6 1,686,905 + -0.7 1,687,038 + -1.3 1,687,046 - +0.6 1,687,126 + -1.9 1,687,158 - -2.2 1,687,183 - Dsui_1604 0.14 -0.1 1,687,195 + Dsui_1604 0.16 -0.6 1,687,204 - Dsui_1604 0.17 +0.1 1,687,247 + Dsui_1604 0.24 +0.9 1,687,268 + Dsui_1604 0.27 +1.5 1,687,338 - Dsui_1604 0.38 +0.4 1,687,340 + Dsui_1604 0.39 -0.1 1,687,348 - +0.5 1,687,356 + Dsui_1604 0.41 +0.1 1,687,375 + Dsui_1604 0.44 +0.3 1,687,416 - Dsui_1604 0.51 +0.6 1,687,557 - Dsui_1604 0.73 -0.7 1,687,577 + Dsui_1604 0.76 -0.9 1,687,610 - Dsui_1604 0.81 +0.1 1,687,667 - +1.1 1,688,049 + -0.5 1,688,062 - -0.7 1,688,074 + -0.3 1,688,120 - Dsui_1605 0.13 -0.9 1,688,131 + Dsui_1605 0.14 -1.0 1,688,182 + Dsui_1605 0.17 -1.2 1,688,279 - +1.1 1,688,491 + +2.1 1,688,491 + +2.1 1,688,491 + +1.1 1,688,491 + -0.7 1,688,504 + Dsui_1605 0.37 -0.7 1,688,509 + Dsui_1605 0.37 -1.0 1,688,584 + +0.3 1,688,587 - Dsui_1605 0.42 -0.5 1,688,652 + Dsui_1605 0.46 +1.4 1,688,652 + Dsui_1605 0.46 -1.8 1,688,660 - Dsui_1605 0.47 +0.7 1,688,660 - Dsui_1605 0.47 -0.5 1,688,665 - +1.1
Or see this region's nucleotide sequence