Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1531 and Dsui_1532 are separated by 146 nucleotides Dsui_1532 and Dsui_1533 are separated by 76 nucleotides Dsui_1533 and Dsui_1534 are separated by 376 nucleotides
Dsui_1531: Dsui_1531 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,592,324 to 1,594,537
_1531
Dsui_1532: Dsui_1532 - fatty-acid desaturase, at 1,594,684 to 1,595,898
_1532
Dsui_1533: Dsui_1533 - disulfide bond formation protein DsbB, at 1,595,975 to 1,596,466
_1533
Dsui_1534: Dsui_1534 - ribosomal protein L33, at 1,596,843 to 1,596,998
_1534
Position (kb)
1594
1595
1596 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1593.720 kb on - strand, within Dsui_1531 at 1593.722 kb on + strand at 1593.727 kb on + strand, within Dsui_1531 at 1593.730 kb on - strand, within Dsui_1531 at 1593.735 kb on - strand, within Dsui_1531 at 1593.765 kb on + strand at 1593.802 kb on + strand at 1593.827 kb on + strand at 1593.956 kb on + strand at 1593.965 kb on - strand, within Dsui_1531 at 1593.965 kb on - strand, within Dsui_1531 at 1594.152 kb on + strand at 1594.193 kb on + strand, within Dsui_1531 at 1594.270 kb on + strand, within Dsui_1531 at 1594.278 kb on - strand, within Dsui_1531 at 1594.278 kb on - strand, within Dsui_1531 at 1594.292 kb on - strand, within Dsui_1531 at 1594.295 kb on + strand, within Dsui_1531 at 1594.329 kb on + strand at 1594.394 kb on + strand at 1594.493 kb on - strand at 1594.493 kb on - strand at 1594.516 kb on + strand at 1594.540 kb on + strand at 1594.670 kb on + strand at 1594.683 kb on - strand at 1594.711 kb on + strand at 1594.744 kb on - strand at 1594.746 kb on + strand at 1594.751 kb on + strand at 1594.796 kb on + strand at 1594.983 kb on + strand, within Dsui_1532 at 1594.983 kb on + strand, within Dsui_1532 at 1595.033 kb on - strand, within Dsui_1532 at 1595.191 kb on + strand, within Dsui_1532 at 1595.250 kb on + strand, within Dsui_1532 at 1595.250 kb on + strand, within Dsui_1532 at 1595.258 kb on - strand, within Dsui_1532 at 1595.294 kb on + strand, within Dsui_1532 at 1595.332 kb on - strand, within Dsui_1532 at 1595.392 kb on - strand, within Dsui_1532 at 1595.429 kb on + strand, within Dsui_1532 at 1595.442 kb on - strand, within Dsui_1532 at 1595.501 kb on + strand, within Dsui_1532 at 1595.579 kb on + strand, within Dsui_1532 at 1595.592 kb on + strand, within Dsui_1532 at 1595.757 kb on + strand, within Dsui_1532 at 1595.775 kb on - strand, within Dsui_1532 at 1595.796 kb on - strand at 1595.921 kb on - strand at 1595.953 kb on + strand at 1596.046 kb on - strand, within Dsui_1533 at 1596.056 kb on - strand at 1596.153 kb on - strand at 1596.183 kb on - strand, within Dsui_1533 at 1596.224 kb on + strand, within Dsui_1533 at 1596.237 kb on - strand, within Dsui_1533 at 1596.263 kb on + strand, within Dsui_1533 at 1596.263 kb on + strand, within Dsui_1533 at 1596.271 kb on - strand at 1596.370 kb on + strand, within Dsui_1533 at 1596.373 kb on - strand, within Dsui_1533 at 1596.379 kb on - strand at 1596.525 kb on + strand at 1596.530 kb on + strand at 1596.838 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,593,720 - Dsui_1531 0.63 +0.4 1,593,722 + +0.6 1,593,727 + Dsui_1531 0.63 +0.6 1,593,730 - Dsui_1531 0.64 -0.6 1,593,735 - Dsui_1531 0.64 +0.2 1,593,765 + +2.1 1,593,802 + +0.6 1,593,827 + +1.6 1,593,956 + +1.1 1,593,965 - Dsui_1531 0.74 +0.4 1,593,965 - Dsui_1531 0.74 +0.0 1,594,152 + -0.4 1,594,193 + Dsui_1531 0.84 +0.0 1,594,270 + Dsui_1531 0.88 -3.4 1,594,278 - Dsui_1531 0.88 -0.2 1,594,278 - Dsui_1531 0.88 +0.0 1,594,292 - Dsui_1531 0.89 -1.4 1,594,295 + Dsui_1531 0.89 -0.7 1,594,329 + -0.4 1,594,394 + -1.2 1,594,493 - +0.3 1,594,493 - +0.3 1,594,516 + +0.8 1,594,540 + -0.8 1,594,670 + -0.4 1,594,683 - +2.1 1,594,711 + -0.2 1,594,744 - +0.5 1,594,746 + -0.7 1,594,751 + -0.3 1,594,796 + -0.2 1,594,983 + Dsui_1532 0.25 -0.5 1,594,983 + Dsui_1532 0.25 -0.0 1,595,033 - Dsui_1532 0.29 -0.8 1,595,191 + Dsui_1532 0.42 -0.2 1,595,250 + Dsui_1532 0.47 -0.8 1,595,250 + Dsui_1532 0.47 -1.6 1,595,258 - Dsui_1532 0.47 -1.3 1,595,294 + Dsui_1532 0.50 -0.9 1,595,332 - Dsui_1532 0.53 +0.2 1,595,392 - Dsui_1532 0.58 -0.2 1,595,429 + Dsui_1532 0.61 -1.2 1,595,442 - Dsui_1532 0.62 -0.1 1,595,501 + Dsui_1532 0.67 -0.7 1,595,579 + Dsui_1532 0.74 -0.3 1,595,592 + Dsui_1532 0.75 -0.2 1,595,757 + Dsui_1532 0.88 +0.1 1,595,775 - Dsui_1532 0.90 -0.0 1,595,796 - -0.4 1,595,921 - +0.3 1,595,953 + -0.1 1,596,046 - Dsui_1533 0.14 -0.9 1,596,056 - +2.1 1,596,153 - -0.5 1,596,183 - Dsui_1533 0.42 +0.8 1,596,224 + Dsui_1533 0.51 -0.4 1,596,237 - Dsui_1533 0.53 +0.0 1,596,263 + Dsui_1533 0.59 -1.3 1,596,263 + Dsui_1533 0.59 +0.4 1,596,271 - -0.2 1,596,370 + Dsui_1533 0.80 +0.1 1,596,373 - Dsui_1533 0.81 -1.3 1,596,379 - +1.1 1,596,525 + +0.6 1,596,530 + -0.0 1,596,838 - +0.6
Or see this region's nucleotide sequence