Strain Fitness in Dechlorosoma suillum PS around Dsui_1532

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1531 and Dsui_1532 are separated by 146 nucleotidesDsui_1532 and Dsui_1533 are separated by 76 nucleotidesDsui_1533 and Dsui_1534 are separated by 376 nucleotides Dsui_1531: Dsui_1531 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,592,324 to 1,594,537 _1531 Dsui_1532: Dsui_1532 - fatty-acid desaturase, at 1,594,684 to 1,595,898 _1532 Dsui_1533: Dsui_1533 - disulfide bond formation protein DsbB, at 1,595,975 to 1,596,466 _1533 Dsui_1534: Dsui_1534 - ribosomal protein L33, at 1,596,843 to 1,596,998 _1534 Position (kb) 1594 1595 1596Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1593.720 kb on - strand, within Dsui_1531at 1593.722 kb on + strandat 1593.727 kb on + strand, within Dsui_1531at 1593.730 kb on - strand, within Dsui_1531at 1593.735 kb on - strand, within Dsui_1531at 1593.765 kb on + strandat 1593.802 kb on + strandat 1593.827 kb on + strandat 1593.956 kb on + strandat 1593.965 kb on - strand, within Dsui_1531at 1593.965 kb on - strand, within Dsui_1531at 1594.152 kb on + strandat 1594.193 kb on + strand, within Dsui_1531at 1594.270 kb on + strand, within Dsui_1531at 1594.278 kb on - strand, within Dsui_1531at 1594.278 kb on - strand, within Dsui_1531at 1594.292 kb on - strand, within Dsui_1531at 1594.295 kb on + strand, within Dsui_1531at 1594.329 kb on + strandat 1594.394 kb on + strandat 1594.493 kb on - strandat 1594.493 kb on - strandat 1594.516 kb on + strandat 1594.540 kb on + strandat 1594.670 kb on + strandat 1594.683 kb on - strandat 1594.711 kb on + strandat 1594.744 kb on - strandat 1594.746 kb on + strandat 1594.751 kb on + strandat 1594.796 kb on + strandat 1594.983 kb on + strand, within Dsui_1532at 1594.983 kb on + strand, within Dsui_1532at 1595.033 kb on - strand, within Dsui_1532at 1595.191 kb on + strand, within Dsui_1532at 1595.250 kb on + strand, within Dsui_1532at 1595.250 kb on + strand, within Dsui_1532at 1595.258 kb on - strand, within Dsui_1532at 1595.294 kb on + strand, within Dsui_1532at 1595.332 kb on - strand, within Dsui_1532at 1595.392 kb on - strand, within Dsui_1532at 1595.429 kb on + strand, within Dsui_1532at 1595.442 kb on - strand, within Dsui_1532at 1595.501 kb on + strand, within Dsui_1532at 1595.579 kb on + strand, within Dsui_1532at 1595.592 kb on + strand, within Dsui_1532at 1595.757 kb on + strand, within Dsui_1532at 1595.775 kb on - strand, within Dsui_1532at 1595.796 kb on - strandat 1595.921 kb on - strandat 1595.953 kb on + strandat 1596.046 kb on - strand, within Dsui_1533at 1596.056 kb on - strandat 1596.153 kb on - strandat 1596.183 kb on - strand, within Dsui_1533at 1596.224 kb on + strand, within Dsui_1533at 1596.237 kb on - strand, within Dsui_1533at 1596.263 kb on + strand, within Dsui_1533at 1596.263 kb on + strand, within Dsui_1533at 1596.271 kb on - strandat 1596.370 kb on + strand, within Dsui_1533at 1596.373 kb on - strand, within Dsui_1533at 1596.379 kb on - strandat 1596.525 kb on + strandat 1596.530 kb on + strandat 1596.838 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,593,720 - Dsui_1531 0.63 +0.4
1,593,722 + +0.6
1,593,727 + Dsui_1531 0.63 +0.6
1,593,730 - Dsui_1531 0.64 -0.6
1,593,735 - Dsui_1531 0.64 +0.2
1,593,765 + +2.1
1,593,802 + +0.6
1,593,827 + +1.6
1,593,956 + +1.1
1,593,965 - Dsui_1531 0.74 +0.4
1,593,965 - Dsui_1531 0.74 +0.0
1,594,152 + -0.4
1,594,193 + Dsui_1531 0.84 +0.0
1,594,270 + Dsui_1531 0.88 -3.4
1,594,278 - Dsui_1531 0.88 -0.2
1,594,278 - Dsui_1531 0.88 +0.0
1,594,292 - Dsui_1531 0.89 -1.4
1,594,295 + Dsui_1531 0.89 -0.7
1,594,329 + -0.4
1,594,394 + -1.2
1,594,493 - +0.3
1,594,493 - +0.3
1,594,516 + +0.8
1,594,540 + -0.8
1,594,670 + -0.4
1,594,683 - +2.1
1,594,711 + -0.2
1,594,744 - +0.5
1,594,746 + -0.7
1,594,751 + -0.3
1,594,796 + -0.2
1,594,983 + Dsui_1532 0.25 -0.5
1,594,983 + Dsui_1532 0.25 -0.0
1,595,033 - Dsui_1532 0.29 -0.8
1,595,191 + Dsui_1532 0.42 -0.2
1,595,250 + Dsui_1532 0.47 -0.8
1,595,250 + Dsui_1532 0.47 -1.6
1,595,258 - Dsui_1532 0.47 -1.3
1,595,294 + Dsui_1532 0.50 -0.9
1,595,332 - Dsui_1532 0.53 +0.2
1,595,392 - Dsui_1532 0.58 -0.2
1,595,429 + Dsui_1532 0.61 -1.2
1,595,442 - Dsui_1532 0.62 -0.1
1,595,501 + Dsui_1532 0.67 -0.7
1,595,579 + Dsui_1532 0.74 -0.3
1,595,592 + Dsui_1532 0.75 -0.2
1,595,757 + Dsui_1532 0.88 +0.1
1,595,775 - Dsui_1532 0.90 -0.0
1,595,796 - -0.4
1,595,921 - +0.3
1,595,953 + -0.1
1,596,046 - Dsui_1533 0.14 -0.9
1,596,056 - +2.1
1,596,153 - -0.5
1,596,183 - Dsui_1533 0.42 +0.8
1,596,224 + Dsui_1533 0.51 -0.4
1,596,237 - Dsui_1533 0.53 +0.0
1,596,263 + Dsui_1533 0.59 -1.3
1,596,263 + Dsui_1533 0.59 +0.4
1,596,271 - -0.2
1,596,370 + Dsui_1533 0.80 +0.1
1,596,373 - Dsui_1533 0.81 -1.3
1,596,379 - +1.1
1,596,525 + +0.6
1,596,530 + -0.0
1,596,838 - +0.6

Or see this region's nucleotide sequence