Strain Fitness in Dechlorosoma suillum PS around Dsui_1458

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1456 and Dsui_1457 are separated by 170 nucleotidesDsui_1457 and Dsui_1458 are separated by 101 nucleotidesDsui_1458 and Dsui_1459 are separated by 1 nucleotides Dsui_1456: Dsui_1456 - HD-GYP domain-containing protein, at 1,515,104 to 1,516,692 _1456 Dsui_1457: Dsui_1457 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,516,863 to 1,517,258 _1457 Dsui_1458: Dsui_1458 - phosphohistidine phosphatase SixA, at 1,517,360 to 1,517,851 _1458 Dsui_1459: Dsui_1459 - hypothetical protein, at 1,517,853 to 1,519,376 _1459 Position (kb) 1517 1518Strain fitness (log2 ratio) -2 -1 0 1at 1516.385 kb on - strand, within Dsui_1456at 1516.432 kb on + strand, within Dsui_1456at 1516.541 kb on + strandat 1516.541 kb on + strandat 1516.559 kb on - strandat 1516.667 kb on + strandat 1516.809 kb on - strandat 1516.882 kb on + strandat 1516.887 kb on + strandat 1517.071 kb on + strand, within Dsui_1457at 1517.164 kb on - strandat 1517.318 kb on + strandat 1517.386 kb on + strandat 1517.407 kb on + strandat 1517.424 kb on + strand, within Dsui_1458at 1517.467 kb on - strand, within Dsui_1458at 1517.490 kb on + strand, within Dsui_1458at 1517.574 kb on + strand, within Dsui_1458at 1517.584 kb on + strand, within Dsui_1458at 1517.585 kb on + strand, within Dsui_1458at 1517.635 kb on + strand, within Dsui_1458at 1517.668 kb on + strand, within Dsui_1458at 1517.676 kb on - strand, within Dsui_1458at 1517.691 kb on - strand, within Dsui_1458at 1517.704 kb on + strand, within Dsui_1458at 1517.928 kb on - strandat 1517.991 kb on - strandat 1518.337 kb on - strand, within Dsui_1459at 1518.457 kb on - strand, within Dsui_1459at 1518.560 kb on - strand, within Dsui_1459at 1518.651 kb on + strand, within Dsui_1459at 1518.689 kb on - strand, within Dsui_1459at 1518.769 kb on + strand, within Dsui_1459at 1518.777 kb on - strand, within Dsui_1459at 1518.833 kb on + strand, within Dsui_1459

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,516,385 - Dsui_1456 0.81 +0.7
1,516,432 + Dsui_1456 0.84 +0.5
1,516,541 + -0.4
1,516,541 + +0.7
1,516,559 - +0.7
1,516,667 + -0.3
1,516,809 - +1.1
1,516,882 + +0.0
1,516,887 + +1.6
1,517,071 + Dsui_1457 0.53 -0.6
1,517,164 - +1.1
1,517,318 + -2.2
1,517,386 + -1.2
1,517,407 + -0.2
1,517,424 + Dsui_1458 0.13 -1.0
1,517,467 - Dsui_1458 0.22 +0.1
1,517,490 + Dsui_1458 0.26 +0.4
1,517,574 + Dsui_1458 0.43 +0.3
1,517,584 + Dsui_1458 0.46 +0.1
1,517,585 + Dsui_1458 0.46 +0.1
1,517,635 + Dsui_1458 0.56 -1.0
1,517,668 + Dsui_1458 0.63 +0.7
1,517,676 - Dsui_1458 0.64 -1.3
1,517,691 - Dsui_1458 0.67 +0.7
1,517,704 + Dsui_1458 0.70 +0.4
1,517,928 - +0.2
1,517,991 - -0.9
1,518,337 - Dsui_1459 0.32 +1.1
1,518,457 - Dsui_1459 0.40 +0.9
1,518,560 - Dsui_1459 0.46 -0.7
1,518,651 + Dsui_1459 0.52 -1.0
1,518,689 - Dsui_1459 0.55 -0.1
1,518,769 + Dsui_1459 0.60 -0.3
1,518,777 - Dsui_1459 0.61 -0.8
1,518,833 + Dsui_1459 0.64 -0.2

Or see this region's nucleotide sequence