Strain Fitness in Dechlorosoma suillum PS around Dsui_1378

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1377 and Dsui_1378 are separated by 281 nucleotidesDsui_1378 and Dsui_1379 are separated by 6 nucleotidesDsui_1379 and Dsui_1380 are separated by 1 nucleotides Dsui_1377: Dsui_1377 - phasin family protein, at 1,433,707 to 1,434,282 _1377 Dsui_1378: Dsui_1378 - enoyl-CoA hydratase/carnithine racemase, at 1,434,564 to 1,435,340 _1378 Dsui_1379: Dsui_1379 - lipopolysaccharide transport periplasmic protein LptA, at 1,435,347 to 1,435,955 _1379 Dsui_1380: Dsui_1380 - hypothetical protein, at 1,435,957 to 1,436,547 _1380 Position (kb) 1434 1435 1436Strain fitness (log2 ratio) -2 -1 0 1at 1433.570 kb on + strandat 1433.570 kb on + strandat 1433.621 kb on - strandat 1433.621 kb on - strandat 1433.648 kb on + strandat 1433.704 kb on + strandat 1433.814 kb on + strand, within Dsui_1377at 1434.050 kb on + strand, within Dsui_1377at 1434.058 kb on - strand, within Dsui_1377at 1434.070 kb on + strandat 1434.116 kb on + strandat 1434.124 kb on - strand, within Dsui_1377at 1434.258 kb on + strandat 1434.266 kb on - strandat 1434.285 kb on - strandat 1434.299 kb on - strandat 1434.299 kb on - strandat 1434.572 kb on + strandat 1434.583 kb on + strandat 1434.673 kb on + strand, within Dsui_1378at 1434.674 kb on - strand, within Dsui_1378at 1434.796 kb on + strand, within Dsui_1378at 1434.864 kb on - strand, within Dsui_1378at 1434.874 kb on + strand, within Dsui_1378at 1434.874 kb on + strand, within Dsui_1378at 1434.874 kb on + strand, within Dsui_1378at 1434.882 kb on - strand, within Dsui_1378at 1434.883 kb on - strand, within Dsui_1378at 1434.936 kb on - strand, within Dsui_1378at 1434.961 kb on - strand, within Dsui_1378at 1435.030 kb on - strand, within Dsui_1378at 1435.099 kb on + strand, within Dsui_1378at 1435.127 kb on - strand, within Dsui_1378at 1435.305 kb on + strandat 1435.305 kb on + strandat 1435.311 kb on + strandat 1435.344 kb on + strandat 1435.344 kb on + strandat 1435.352 kb on - strandat 1435.352 kb on - strandat 1435.352 kb on - strandat 1435.352 kb on - strandat 1435.352 kb on - strandat 1435.375 kb on - strandat 1435.379 kb on + strandat 1435.379 kb on + strandat 1435.387 kb on - strandat 1435.963 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,433,570 + -0.5
1,433,570 + -0.5
1,433,621 - +0.4
1,433,621 - +1.3
1,433,648 + -0.8
1,433,704 + +0.1
1,433,814 + Dsui_1377 0.19 -0.8
1,434,050 + Dsui_1377 0.60 -1.3
1,434,058 - Dsui_1377 0.61 -1.5
1,434,070 + +0.7
1,434,116 + +0.8
1,434,124 - Dsui_1377 0.72 -1.2
1,434,258 + -1.2
1,434,266 - -0.9
1,434,285 - -1.6
1,434,299 - -1.3
1,434,299 - -1.1
1,434,572 + -1.1
1,434,583 + -0.5
1,434,673 + Dsui_1378 0.14 +0.9
1,434,674 - Dsui_1378 0.14 -0.4
1,434,796 + Dsui_1378 0.30 -0.3
1,434,864 - Dsui_1378 0.39 -0.5
1,434,874 + Dsui_1378 0.40 -0.3
1,434,874 + Dsui_1378 0.40 +0.7
1,434,874 + Dsui_1378 0.40 +0.1
1,434,882 - Dsui_1378 0.41 +0.2
1,434,883 - Dsui_1378 0.41 -1.1
1,434,936 - Dsui_1378 0.48 -0.5
1,434,961 - Dsui_1378 0.51 -0.8
1,435,030 - Dsui_1378 0.60 -1.1
1,435,099 + Dsui_1378 0.69 -0.7
1,435,127 - Dsui_1378 0.72 -1.8
1,435,305 + +0.1
1,435,305 + +0.7
1,435,311 + -0.3
1,435,344 + -0.8
1,435,344 + -0.3
1,435,352 - -0.4
1,435,352 - -0.5
1,435,352 - -0.5
1,435,352 - -0.6
1,435,352 - -1.2
1,435,375 - -0.5
1,435,379 + -0.7
1,435,379 + +0.5
1,435,387 - -0.8
1,435,963 - -0.6

Or see this region's nucleotide sequence