Strain Fitness in Dechlorosoma suillum PS around Dsui_1102

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1101 and Dsui_1102 are separated by 81 nucleotidesDsui_1102 and Dsui_1103 overlap by 10 nucleotides Dsui_1101: Dsui_1101 - glucosamine--fructose-6-phosphate aminotransferase, isomerizing, at 1,143,987 to 1,145,813 _1101 Dsui_1102: Dsui_1102 - hypothetical protein, at 1,145,895 to 1,146,902 _1102 Dsui_1103: Dsui_1103 - DNA-binding domain-containing protein, AraC-type, at 1,146,893 to 1,147,978 _1103 Position (kb) 1145 1146 1147Strain fitness (log2 ratio) -2 -1 0 1at 1145.934 kb on - strandat 1145.996 kb on - strand, within Dsui_1102at 1146.123 kb on - strand, within Dsui_1102at 1146.170 kb on + strand, within Dsui_1102at 1146.175 kb on + strand, within Dsui_1102at 1146.175 kb on + strand, within Dsui_1102at 1146.183 kb on - strand, within Dsui_1102at 1146.185 kb on + strand, within Dsui_1102at 1146.206 kb on + strand, within Dsui_1102at 1146.214 kb on - strand, within Dsui_1102at 1146.214 kb on - strand, within Dsui_1102at 1146.214 kb on - strand, within Dsui_1102at 1146.214 kb on - strand, within Dsui_1102at 1146.329 kb on + strand, within Dsui_1102at 1146.382 kb on - strand, within Dsui_1102at 1146.681 kb on + strand, within Dsui_1102at 1146.683 kb on + strand, within Dsui_1102at 1146.691 kb on - strand, within Dsui_1102at 1146.725 kb on - strand, within Dsui_1102at 1146.728 kb on + strand, within Dsui_1102at 1146.736 kb on - strand, within Dsui_1102at 1146.736 kb on - strand, within Dsui_1102at 1146.753 kb on - strand, within Dsui_1102at 1146.826 kb on - strandat 1146.831 kb on - strandat 1146.851 kb on - strandat 1146.877 kb on + strandat 1146.915 kb on - strandat 1147.219 kb on + strand, within Dsui_1103at 1147.261 kb on + strandat 1147.398 kb on + strand, within Dsui_1103at 1147.398 kb on + strandat 1147.403 kb on + strand, within Dsui_1103at 1147.403 kb on + strand, within Dsui_1103at 1147.406 kb on - strand, within Dsui_1103at 1147.406 kb on - strand, within Dsui_1103at 1147.406 kb on - strand, within Dsui_1103at 1147.411 kb on - strand, within Dsui_1103at 1147.416 kb on - strand, within Dsui_1103at 1147.462 kb on + strand, within Dsui_1103at 1147.558 kb on + strand, within Dsui_1103at 1147.566 kb on - strand, within Dsui_1103at 1147.585 kb on - strand, within Dsui_1103at 1147.639 kb on + strand, within Dsui_1103at 1147.781 kb on - strand, within Dsui_1103at 1147.782 kb on - strand, within Dsui_1103at 1147.788 kb on + strandat 1147.873 kb on - strandat 1147.885 kb on + strandat 1147.885 kb on + strandat 1147.893 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,145,934 - -0.0
1,145,996 - Dsui_1102 0.10 -0.3
1,146,123 - Dsui_1102 0.23 -0.7
1,146,170 + Dsui_1102 0.27 -0.5
1,146,175 + Dsui_1102 0.28 -0.1
1,146,175 + Dsui_1102 0.28 +0.0
1,146,183 - Dsui_1102 0.29 -1.0
1,146,185 + Dsui_1102 0.29 -0.5
1,146,206 + Dsui_1102 0.31 -0.4
1,146,214 - Dsui_1102 0.32 -0.6
1,146,214 - Dsui_1102 0.32 +1.6
1,146,214 - Dsui_1102 0.32 -0.4
1,146,214 - Dsui_1102 0.32 +0.6
1,146,329 + Dsui_1102 0.43 -0.7
1,146,382 - Dsui_1102 0.48 -0.1
1,146,681 + Dsui_1102 0.78 +0.1
1,146,683 + Dsui_1102 0.78 -0.3
1,146,691 - Dsui_1102 0.79 -0.7
1,146,725 - Dsui_1102 0.82 +0.3
1,146,728 + Dsui_1102 0.83 +0.5
1,146,736 - Dsui_1102 0.83 -1.1
1,146,736 - Dsui_1102 0.83 -1.2
1,146,753 - Dsui_1102 0.85 +0.3
1,146,826 - -0.1
1,146,831 - -1.9
1,146,851 - -0.5
1,146,877 + +0.0
1,146,915 - -0.3
1,147,219 + Dsui_1103 0.30 +0.3
1,147,261 + -0.2
1,147,398 + Dsui_1103 0.47 +0.5
1,147,398 + +0.5
1,147,403 + Dsui_1103 0.47 +1.1
1,147,403 + Dsui_1103 0.47 -1.7
1,147,406 - Dsui_1103 0.47 -0.5
1,147,406 - Dsui_1103 0.47 -0.5
1,147,406 - Dsui_1103 0.47 -0.5
1,147,411 - Dsui_1103 0.48 +0.1
1,147,416 - Dsui_1103 0.48 -0.7
1,147,462 + Dsui_1103 0.52 -1.1
1,147,558 + Dsui_1103 0.61 -0.3
1,147,566 - Dsui_1103 0.62 -0.5
1,147,585 - Dsui_1103 0.64 -0.3
1,147,639 + Dsui_1103 0.69 -0.4
1,147,781 - Dsui_1103 0.82 -1.4
1,147,782 - Dsui_1103 0.82 -0.1
1,147,788 + +0.5
1,147,873 - +0.0
1,147,885 + -1.1
1,147,885 + -0.4
1,147,893 - -0.4

Or see this region's nucleotide sequence