Strain Fitness in Dechlorosoma suillum PS around Dsui_1029

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1027 and Dsui_1028 overlap by 11 nucleotidesDsui_1028 and Dsui_1029 are separated by 16 nucleotidesDsui_1029 and Dsui_1030 are separated by 78 nucleotides Dsui_1027: Dsui_1027 - RNA methyltransferase, RsmD family, at 1,060,172 to 1,060,780 _1027 Dsui_1028: Dsui_1028 - pantetheine-phosphate adenylyltransferase, at 1,060,770 to 1,061,267 _1028 Dsui_1029: Dsui_1029 - hypothetical protein, at 1,061,284 to 1,061,541 _1029 Dsui_1030: Dsui_1030 - dynamin family protein, at 1,061,620 to 1,063,575 _1030 Position (kb) 1061 1062Strain fitness (log2 ratio) -1 0 1 2at 1060.328 kb on - strandat 1060.372 kb on - strand, within Dsui_1027at 1060.407 kb on + strand, within Dsui_1027at 1060.460 kb on + strand, within Dsui_1027at 1060.460 kb on + strand, within Dsui_1027at 1060.465 kb on + strand, within Dsui_1027at 1060.551 kb on + strand, within Dsui_1027at 1060.559 kb on - strandat 1060.767 kb on - strandat 1060.767 kb on - strandat 1061.638 kb on - strandat 1061.717 kb on + strandat 1061.725 kb on - strandat 1061.764 kb on + strandat 1061.884 kb on - strand, within Dsui_1030at 1061.947 kb on - strand, within Dsui_1030at 1061.983 kb on - strand, within Dsui_1030at 1062.008 kb on - strand, within Dsui_1030at 1062.060 kb on + strand, within Dsui_1030at 1062.060 kb on + strand, within Dsui_1030at 1062.068 kb on - strand, within Dsui_1030at 1062.085 kb on - strand, within Dsui_1030at 1062.153 kb on + strand, within Dsui_1030at 1062.161 kb on - strand, within Dsui_1030at 1062.237 kb on + strand, within Dsui_1030at 1062.299 kb on - strand, within Dsui_1030at 1062.322 kb on - strand, within Dsui_1030at 1062.325 kb on + strand, within Dsui_1030at 1062.356 kb on + strand, within Dsui_1030at 1062.356 kb on + strand, within Dsui_1030at 1062.356 kb on + strand, within Dsui_1030at 1062.364 kb on - strand, within Dsui_1030at 1062.368 kb on + strand, within Dsui_1030at 1062.389 kb on + strand, within Dsui_1030at 1062.389 kb on + strand, within Dsui_1030at 1062.402 kb on - strand, within Dsui_1030at 1062.440 kb on - strand, within Dsui_1030at 1062.497 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,060,328 - +2.1
1,060,372 - Dsui_1027 0.33 -0.2
1,060,407 + Dsui_1027 0.39 +1.0
1,060,460 + Dsui_1027 0.47 +0.3
1,060,460 + Dsui_1027 0.47 +0.0
1,060,465 + Dsui_1027 0.48 +0.0
1,060,551 + Dsui_1027 0.62 +0.3
1,060,559 - +1.1
1,060,767 - +0.3
1,060,767 - -0.5
1,061,638 - -0.1
1,061,717 + -0.1
1,061,725 - +0.7
1,061,764 + +0.5
1,061,884 - Dsui_1030 0.13 +0.3
1,061,947 - Dsui_1030 0.17 +0.7
1,061,983 - Dsui_1030 0.19 +0.7
1,062,008 - Dsui_1030 0.20 -0.5
1,062,060 + Dsui_1030 0.22 -0.5
1,062,060 + Dsui_1030 0.22 +1.1
1,062,068 - Dsui_1030 0.23 +0.2
1,062,085 - Dsui_1030 0.24 -0.4
1,062,153 + Dsui_1030 0.27 +0.1
1,062,161 - Dsui_1030 0.28 +0.3
1,062,237 + Dsui_1030 0.32 +1.4
1,062,299 - Dsui_1030 0.35 +0.0
1,062,322 - Dsui_1030 0.36 +0.6
1,062,325 + Dsui_1030 0.36 +0.5
1,062,356 + Dsui_1030 0.38 +0.1
1,062,356 + Dsui_1030 0.38 -1.5
1,062,356 + Dsui_1030 0.38 -0.3
1,062,364 - Dsui_1030 0.38 -0.2
1,062,368 + Dsui_1030 0.38 +0.1
1,062,389 + Dsui_1030 0.39 +0.1
1,062,389 + Dsui_1030 0.39 -1.5
1,062,402 - Dsui_1030 0.40 -0.2
1,062,440 - Dsui_1030 0.42 +0.7
1,062,497 + +0.5

Or see this region's nucleotide sequence