Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1017 and Dsui_1018 are separated by 588 nucleotides Dsui_1018 and Dsui_1019 overlap by 30 nucleotides
Dsui_1017: Dsui_1017 - hypothetical protein, at 1,050,402 to 1,050,809
_1017
Dsui_1018: Dsui_1018 - hypothetical protein, at 1,051,398 to 1,051,616
_1018
Dsui_1019: Dsui_1019 - transposase, at 1,051,587 to 1,052,387
_1019
Position (kb)
1051
1052 Strain fitness (log2 ratio)
-2
-1
0
1 at 1050.420 kb on + strand at 1050.428 kb on - strand at 1050.443 kb on + strand, within Dsui_1017 at 1050.475 kb on - strand, within Dsui_1017 at 1050.522 kb on + strand, within Dsui_1017 at 1050.537 kb on + strand, within Dsui_1017 at 1050.568 kb on + strand, within Dsui_1017 at 1050.572 kb on + strand, within Dsui_1017 at 1050.580 kb on - strand, within Dsui_1017 at 1050.613 kb on - strand, within Dsui_1017 at 1050.669 kb on - strand, within Dsui_1017 at 1050.687 kb on + strand, within Dsui_1017 at 1050.694 kb on - strand, within Dsui_1017 at 1050.695 kb on - strand, within Dsui_1017 at 1050.695 kb on - strand, within Dsui_1017 at 1050.697 kb on + strand, within Dsui_1017 at 1050.698 kb on + strand, within Dsui_1017 at 1050.743 kb on - strand, within Dsui_1017 at 1050.821 kb on - strand at 1050.835 kb on - strand at 1050.847 kb on - strand at 1050.863 kb on + strand at 1050.938 kb on + strand at 1050.938 kb on + strand at 1050.943 kb on + strand at 1050.986 kb on + strand at 1051.031 kb on - strand at 1051.031 kb on - strand at 1051.044 kb on + strand at 1051.059 kb on - strand at 1051.139 kb on + strand at 1051.142 kb on + strand at 1051.142 kb on + strand at 1051.142 kb on + strand at 1051.150 kb on - strand at 1051.253 kb on + strand at 1051.253 kb on + strand at 1051.254 kb on - strand at 1051.285 kb on + strand at 1051.293 kb on - strand at 1051.297 kb on - strand at 1051.385 kb on + strand at 1051.454 kb on + strand, within Dsui_1018 at 1051.475 kb on + strand, within Dsui_1018 at 1051.527 kb on - strand, within Dsui_1018 at 1051.535 kb on + strand, within Dsui_1018 at 1051.543 kb on - strand, within Dsui_1018 at 1051.554 kb on - strand, within Dsui_1018 at 1051.554 kb on - strand, within Dsui_1018 at 1051.572 kb on - strand, within Dsui_1018 at 1051.573 kb on - strand, within Dsui_1018 at 1051.573 kb on - strand, within Dsui_1018 at 1051.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,050,420 + -0.3 1,050,428 - -0.7 1,050,443 + Dsui_1017 0.10 -0.1 1,050,475 - Dsui_1017 0.18 -0.5 1,050,522 + Dsui_1017 0.29 +0.7 1,050,537 + Dsui_1017 0.33 -0.8 1,050,568 + Dsui_1017 0.41 -0.6 1,050,572 + Dsui_1017 0.42 +0.3 1,050,580 - Dsui_1017 0.44 -0.1 1,050,613 - Dsui_1017 0.52 -0.5 1,050,669 - Dsui_1017 0.65 -1.2 1,050,687 + Dsui_1017 0.70 +0.9 1,050,694 - Dsui_1017 0.72 -0.1 1,050,695 - Dsui_1017 0.72 -0.5 1,050,695 - Dsui_1017 0.72 -0.1 1,050,697 + Dsui_1017 0.72 -0.1 1,050,698 + Dsui_1017 0.73 -0.3 1,050,743 - Dsui_1017 0.84 +0.7 1,050,821 - +0.0 1,050,835 - -0.4 1,050,847 - +0.2 1,050,863 + -0.3 1,050,938 + -0.2 1,050,938 + +0.1 1,050,943 + +0.2 1,050,986 + -0.3 1,051,031 - +0.1 1,051,031 - -0.6 1,051,044 + +0.0 1,051,059 - -0.0 1,051,139 + +0.4 1,051,142 + -0.7 1,051,142 + -0.1 1,051,142 + -0.0 1,051,150 - -0.3 1,051,253 + +0.3 1,051,253 + -0.4 1,051,254 - +0.3 1,051,285 + -1.2 1,051,293 - -1.8 1,051,297 - +0.7 1,051,385 + +0.8 1,051,454 + Dsui_1018 0.26 +0.7 1,051,475 + Dsui_1018 0.35 -0.4 1,051,527 - Dsui_1018 0.59 +0.0 1,051,535 + Dsui_1018 0.63 +0.5 1,051,543 - Dsui_1018 0.66 -0.3 1,051,554 - Dsui_1018 0.71 +0.3 1,051,554 - Dsui_1018 0.71 +0.1 1,051,572 - Dsui_1018 0.79 -0.3 1,051,573 - Dsui_1018 0.80 -1.2 1,051,573 - Dsui_1018 0.80 -0.1 1,051,594 - -0.1
Or see this region's nucleotide sequence