Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0966 and Dsui_0967 are separated by 98 nucleotides Dsui_0967 and Dsui_0968 are separated by 54 nucleotides Dsui_0968 and Dsui_0969 are separated by 9 nucleotides
Dsui_0966: Dsui_0966 - methyl-accepting chemotaxis protein, at 990,998 to 993,025
_0966
Dsui_0967: Dsui_0967 - hypothetical protein, at 993,124 to 993,459
_0967
Dsui_0968: Dsui_0968 - deoxyinosine 3'endonuclease (endonuclease V), at 993,514 to 994,167
_0968
Dsui_0969: Dsui_0969 - putative AP superfamily protein, at 994,177 to 995,337
_0969
Position (kb) 993
994 Strain fitness (log2 ratio) -1
0
1
2
3 at 992.148 kb on + strand, within Dsui_0966 at 992.170 kb on - strand at 992.484 kb on + strand, within Dsui_0966 at 992.492 kb on - strand at 992.585 kb on + strand, within Dsui_0966 at 993.364 kb on + strand, within Dsui_0967 at 993.372 kb on - strand, within Dsui_0967 at 993.380 kb on + strand, within Dsui_0967 at 993.405 kb on - strand, within Dsui_0967 at 993.695 kb on - strand, within Dsui_0968 at 993.789 kb on - strand, within Dsui_0968 at 994.027 kb on - strand, within Dsui_0968 at 994.048 kb on + strand, within Dsui_0968 at 994.138 kb on - strand at 994.143 kb on - strand at 994.143 kb on - strand at 994.143 kb on - strand at 994.160 kb on - strand at 994.175 kb on + strand at 994.175 kb on + strand at 994.175 kb on + strand at 994.175 kb on + strand at 994.183 kb on - strand at 994.225 kb on - strand at 994.305 kb on + strand, within Dsui_0969 at 994.455 kb on + strand, within Dsui_0969
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 992,148 + Dsui_0966 0.57 +1.4 992,170 - -0.2 992,484 + Dsui_0966 0.73 +0.4 992,492 - +3.1 992,585 + Dsui_0966 0.78 -1.5 993,364 + Dsui_0967 0.71 -1.1 993,372 - Dsui_0967 0.74 -0.2 993,380 + Dsui_0967 0.76 -1.1 993,405 - Dsui_0967 0.84 -0.7 993,695 - Dsui_0968 0.28 -0.0 993,789 - Dsui_0968 0.42 -0.3 994,027 - Dsui_0968 0.78 -1.0 994,048 + Dsui_0968 0.82 -0.5 994,138 - +0.5 994,143 - -0.9 994,143 - +2.1 994,143 - -0.6 994,160 - +0.4 994,175 + +0.4 994,175 + -0.3 994,175 + -0.7 994,175 + -1.2 994,183 - +0.4 994,225 - -1.0 994,305 + Dsui_0969 0.11 -1.4 994,455 + Dsui_0969 0.24 +1.2
Or see this region's nucleotide sequence