Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0693 and Dsui_0694 are separated by 90 nucleotides Dsui_0694 and Dsui_0695 are separated by 21 nucleotides
Dsui_0693: Dsui_0693 - hypothetical protein, at 688,517 to 689,674
_0693
Dsui_0694: Dsui_0694 - dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein, at 689,765 to 690,520
_0694
Dsui_0695: Dsui_0695 - putative ATPase of the PP-loop superfamily implicated in cell cycle control, at 690,542 to 691,441
_0695
Position (kb) 689
690
691 Strain fitness (log2 ratio) -2
-1
0
1
2 at 689.751 kb on + strand at 689.759 kb on - strand at 689.782 kb on + strand at 689.872 kb on + strand, within Dsui_0694 at 689.979 kb on + strand, within Dsui_0694 at 689.979 kb on + strand, within Dsui_0694 at 689.979 kb on + strand, within Dsui_0694 at 689.984 kb on + strand, within Dsui_0694 at 690.071 kb on + strand, within Dsui_0694 at 690.071 kb on + strand, within Dsui_0694 at 690.071 kb on + strand, within Dsui_0694 at 690.071 kb on + strand, within Dsui_0694 at 690.071 kb on + strand, within Dsui_0694 at 690.079 kb on - strand at 690.079 kb on - strand at 690.079 kb on - strand at 690.079 kb on - strand, within Dsui_0694 at 690.107 kb on - strand at 690.129 kb on - strand, within Dsui_0694 at 690.131 kb on + strand, within Dsui_0694 at 690.202 kb on + strand, within Dsui_0694 at 690.229 kb on - strand at 690.233 kb on + strand, within Dsui_0694 at 690.252 kb on + strand, within Dsui_0694 at 690.277 kb on + strand, within Dsui_0694 at 690.497 kb on - strand at 690.497 kb on - strand at 690.517 kb on - strand at 690.548 kb on + strand at 690.550 kb on + strand at 690.550 kb on + strand at 690.550 kb on + strand at 690.550 kb on + strand at 690.558 kb on + strand at 690.558 kb on - strand at 690.641 kb on + strand, within Dsui_0695 at 690.641 kb on + strand, within Dsui_0695 at 690.641 kb on + strand, within Dsui_0695 at 690.649 kb on - strand, within Dsui_0695 at 690.649 kb on - strand at 690.649 kb on - strand, within Dsui_0695 at 690.701 kb on + strand, within Dsui_0695 at 690.800 kb on - strand, within Dsui_0695 at 690.829 kb on + strand, within Dsui_0695 at 690.837 kb on + strand, within Dsui_0695 at 690.845 kb on - strand, within Dsui_0695 at 690.896 kb on + strand, within Dsui_0695 at 690.899 kb on - strand, within Dsui_0695 at 691.026 kb on - strand, within Dsui_0695 at 691.114 kb on + strand, within Dsui_0695 at 691.143 kb on + strand, within Dsui_0695 at 691.181 kb on + strand, within Dsui_0695 at 691.269 kb on + strand, within Dsui_0695 at 691.319 kb on + strand, within Dsui_0695 at 691.420 kb on + strand at 691.435 kb on + strand at 691.499 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 689,751 + +0.5 689,759 - +2.1 689,782 + -0.7 689,872 + Dsui_0694 0.14 -1.3 689,979 + Dsui_0694 0.28 -1.3 689,979 + Dsui_0694 0.28 -0.4 689,979 + Dsui_0694 0.28 +1.7 689,984 + Dsui_0694 0.29 +0.4 690,071 + Dsui_0694 0.40 -0.2 690,071 + Dsui_0694 0.40 -0.3 690,071 + Dsui_0694 0.40 -0.1 690,071 + Dsui_0694 0.40 -0.1 690,071 + Dsui_0694 0.40 -0.6 690,079 - +0.8 690,079 - -0.9 690,079 - +1.1 690,079 - Dsui_0694 0.42 -1.1 690,107 - +1.7 690,129 - Dsui_0694 0.48 -1.3 690,131 + Dsui_0694 0.48 -0.9 690,202 + Dsui_0694 0.58 -2.1 690,229 - -0.1 690,233 + Dsui_0694 0.62 +1.1 690,252 + Dsui_0694 0.64 -0.8 690,277 + Dsui_0694 0.68 -1.7 690,497 - -0.2 690,497 - +0.5 690,517 - -0.5 690,548 + +0.4 690,550 + +0.3 690,550 + -0.1 690,550 + +0.3 690,550 + -0.3 690,558 + +0.5 690,558 - -0.3 690,641 + Dsui_0695 0.11 +0.1 690,641 + Dsui_0695 0.11 +0.5 690,641 + Dsui_0695 0.11 -0.3 690,649 - Dsui_0695 0.12 +0.0 690,649 - +1.3 690,649 - Dsui_0695 0.12 +0.5 690,701 + Dsui_0695 0.18 +0.3 690,800 - Dsui_0695 0.29 -1.0 690,829 + Dsui_0695 0.32 -0.3 690,837 + Dsui_0695 0.33 +0.2 690,845 - Dsui_0695 0.34 +0.7 690,896 + Dsui_0695 0.39 +0.3 690,899 - Dsui_0695 0.40 -0.2 691,026 - Dsui_0695 0.54 +0.1 691,114 + Dsui_0695 0.64 +0.1 691,143 + Dsui_0695 0.67 -0.6 691,181 + Dsui_0695 0.71 -0.2 691,269 + Dsui_0695 0.81 +0.1 691,319 + Dsui_0695 0.86 -1.7 691,420 + -0.1 691,435 + -2.0 691,499 + -0.1
Or see this region's nucleotide sequence