Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0602 and Dsui_0603 are separated by 13 nucleotides Dsui_0603 and Dsui_0604 are separated by 158 nucleotides Dsui_0604 and Dsui_0605 are separated by 16 nucleotides
Dsui_0602: Dsui_0602 - pyrroline-5-carboxylate reductase, at 597,289 to 598,101
_0602
Dsui_0603: Dsui_0603 - pyridoxal phosphate enzyme, YggS family, at 598,115 to 598,819
_0603
Dsui_0604: Dsui_0604 - pilus retraction protein PilT, at 598,978 to 600,021
_0604
Dsui_0605: Dsui_0605 - pilus retraction protein PilT, at 600,038 to 601,174
_0605
Position (kb) 598
599
600
601 Strain fitness (log2 ratio) -1
0
1
2 at 598.160 kb on - strand at 598.176 kb on + strand at 598.200 kb on + strand, within Dsui_0603 at 598.212 kb on + strand, within Dsui_0603 at 598.262 kb on + strand, within Dsui_0603 at 598.355 kb on - strand, within Dsui_0603 at 598.409 kb on + strand at 598.451 kb on - strand, within Dsui_0603 at 598.564 kb on + strand at 598.710 kb on + strand, within Dsui_0603 at 598.712 kb on - strand, within Dsui_0603 at 598.744 kb on + strand, within Dsui_0603 at 598.781 kb on + strand at 598.917 kb on - strand at 598.938 kb on - strand at 598.962 kb on + strand at 599.128 kb on + strand, within Dsui_0604 at 599.128 kb on + strand, within Dsui_0604 at 599.154 kb on + strand, within Dsui_0604 at 599.209 kb on - strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.291 kb on + strand, within Dsui_0604 at 599.356 kb on - strand, within Dsui_0604 at 599.369 kb on - strand at 599.385 kb on + strand, within Dsui_0604 at 599.387 kb on + strand, within Dsui_0604 at 599.398 kb on - strand, within Dsui_0604 at 599.447 kb on - strand, within Dsui_0604 at 599.447 kb on - strand, within Dsui_0604 at 599.479 kb on + strand, within Dsui_0604 at 599.487 kb on - strand, within Dsui_0604 at 599.487 kb on - strand, within Dsui_0604 at 599.516 kb on + strand, within Dsui_0604 at 599.542 kb on - strand, within Dsui_0604 at 599.544 kb on + strand, within Dsui_0604 at 599.598 kb on + strand, within Dsui_0604 at 599.755 kb on - strand, within Dsui_0604 at 599.883 kb on - strand, within Dsui_0604 at 600.074 kb on - strand at 600.097 kb on - strand at 600.133 kb on - strand at 600.175 kb on - strand, within Dsui_0605 at 600.206 kb on - strand, within Dsui_0605 at 600.213 kb on + strand, within Dsui_0605 at 600.418 kb on + strand, within Dsui_0605 at 600.545 kb on - strand, within Dsui_0605 at 600.553 kb on - strand, within Dsui_0605 at 600.695 kb on - strand, within Dsui_0605 at 600.828 kb on + strand, within Dsui_0605 at 600.828 kb on + strand, within Dsui_0605 at 600.828 kb on + strand, within Dsui_0605 at 600.836 kb on - strand, within Dsui_0605 at 600.836 kb on - strand, within Dsui_0605 at 600.836 kb on - strand, within Dsui_0605 at 600.860 kb on - strand, within Dsui_0605 at 600.968 kb on - strand, within Dsui_0605
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 598,160 - +1.1 598,176 + +2.1 598,200 + Dsui_0603 0.12 +0.4 598,212 + Dsui_0603 0.14 -0.6 598,262 + Dsui_0603 0.21 -0.4 598,355 - Dsui_0603 0.34 -0.5 598,409 + +1.6 598,451 - Dsui_0603 0.48 -1.0 598,564 + +0.6 598,710 + Dsui_0603 0.84 +0.3 598,712 - Dsui_0603 0.85 -0.7 598,744 + Dsui_0603 0.89 -0.2 598,781 + +0.6 598,917 - +0.8 598,938 - -0.7 598,962 + +0.8 599,128 + Dsui_0604 0.14 -0.0 599,128 + Dsui_0604 0.14 +0.5 599,154 + Dsui_0604 0.17 -0.7 599,209 - Dsui_0604 0.22 -0.5 599,291 + Dsui_0604 0.30 +0.2 599,291 + Dsui_0604 0.30 -1.0 599,291 + Dsui_0604 0.30 +0.7 599,291 + Dsui_0604 0.30 -0.0 599,356 - Dsui_0604 0.36 -1.2 599,369 - +0.6 599,385 + Dsui_0604 0.39 +0.2 599,387 + Dsui_0604 0.39 -0.2 599,398 - Dsui_0604 0.40 -0.0 599,447 - Dsui_0604 0.45 -0.2 599,447 - Dsui_0604 0.45 -0.4 599,479 + Dsui_0604 0.48 +0.3 599,487 - Dsui_0604 0.49 +0.2 599,487 - Dsui_0604 0.49 -1.0 599,516 + Dsui_0604 0.52 +1.1 599,542 - Dsui_0604 0.54 +0.3 599,544 + Dsui_0604 0.54 +0.4 599,598 + Dsui_0604 0.59 -0.3 599,755 - Dsui_0604 0.74 -1.7 599,883 - Dsui_0604 0.87 +0.1 600,074 - -1.1 600,097 - +0.7 600,133 - -1.2 600,175 - Dsui_0605 0.12 +0.4 600,206 - Dsui_0605 0.15 -0.8 600,213 + Dsui_0605 0.15 +0.0 600,418 + Dsui_0605 0.33 -0.1 600,545 - Dsui_0605 0.45 +0.6 600,553 - Dsui_0605 0.45 +0.7 600,695 - Dsui_0605 0.58 -0.6 600,828 + Dsui_0605 0.69 +0.1 600,828 + Dsui_0605 0.69 +0.1 600,828 + Dsui_0605 0.69 +0.2 600,836 - Dsui_0605 0.70 +0.9 600,836 - Dsui_0605 0.70 +2.0 600,836 - Dsui_0605 0.70 -0.1 600,860 - Dsui_0605 0.72 -0.1 600,968 - Dsui_0605 0.82 -1.1
Or see this region's nucleotide sequence