Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0558 and Dsui_0559 are separated by 180 nucleotides Dsui_0559 and Dsui_0560 are separated by 365 nucleotides
Dsui_0558: Dsui_0558 - tetratricopeptide repeat protein, at 558,525 to 559,973
_0558
Dsui_0559: Dsui_0559 - alkylphosphonate utilization operon protein PhnA, at 560,154 to 560,495
_0559
Dsui_0560: Dsui_0560 - molybdenum-pterin binding domain protein, at 560,861 to 561,289
_0560
Position (kb) 560
561 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 559.172 kb on - strand, within Dsui_0558 at 559.224 kb on + strand, within Dsui_0558 at 559.284 kb on + strand, within Dsui_0558 at 559.321 kb on - strand, within Dsui_0558 at 559.362 kb on - strand, within Dsui_0558 at 559.368 kb on - strand, within Dsui_0558 at 559.535 kb on + strand at 559.543 kb on - strand at 559.593 kb on + strand at 559.601 kb on - strand at 559.651 kb on - strand at 559.651 kb on - strand at 559.674 kb on - strand at 559.705 kb on - strand, within Dsui_0558 at 559.901 kb on + strand at 559.903 kb on - strand at 559.970 kb on - strand at 560.050 kb on - strand at 560.052 kb on + strand at 560.073 kb on + strand at 560.115 kb on - strand at 560.152 kb on + strand at 560.160 kb on - strand at 560.160 kb on - strand at 560.183 kb on - strand at 560.206 kb on - strand, within Dsui_0559 at 560.250 kb on - strand, within Dsui_0559 at 560.287 kb on + strand, within Dsui_0559 at 560.287 kb on + strand, within Dsui_0559 at 560.295 kb on - strand, within Dsui_0559 at 560.372 kb on - strand, within Dsui_0559 at 560.403 kb on - strand, within Dsui_0559 at 560.486 kb on + strand at 560.494 kb on - strand at 560.494 kb on - strand at 560.499 kb on + strand at 560.499 kb on - strand at 560.615 kb on - strand at 560.656 kb on + strand at 560.656 kb on + strand at 560.773 kb on + strand at 560.773 kb on + strand at 560.773 kb on + strand at 560.789 kb on - strand at 560.832 kb on + strand at 560.867 kb on - strand at 560.873 kb on + strand at 560.881 kb on - strand at 560.881 kb on - strand at 560.897 kb on + strand at 560.905 kb on - strand, within Dsui_0560 at 560.926 kb on - strand, within Dsui_0560 at 560.998 kb on - strand, within Dsui_0560 at 561.042 kb on + strand, within Dsui_0560 at 561.042 kb on + strand, within Dsui_0560 at 561.050 kb on - strand, within Dsui_0560 at 561.050 kb on - strand, within Dsui_0560 at 561.102 kb on - strand, within Dsui_0560 at 561.108 kb on + strand, within Dsui_0560 at 561.108 kb on + strand, within Dsui_0560 at 561.116 kb on - strand, within Dsui_0560 at 561.119 kb on + strand, within Dsui_0560 at 561.139 kb on + strand, within Dsui_0560 at 561.147 kb on - strand, within Dsui_0560 at 561.154 kb on + strand, within Dsui_0560 at 561.164 kb on + strand, within Dsui_0560 at 561.172 kb on - strand, within Dsui_0560 at 561.195 kb on - strand, within Dsui_0560 at 561.198 kb on - strand, within Dsui_0560 at 561.218 kb on - strand, within Dsui_0560 at 561.222 kb on + strand, within Dsui_0560 at 561.222 kb on + strand, within Dsui_0560 at 561.230 kb on - strand, within Dsui_0560 at 561.230 kb on - strand, within Dsui_0560 at 561.231 kb on + strand, within Dsui_0560 at 561.238 kb on + strand, within Dsui_0560 at 561.240 kb on - strand, within Dsui_0560 at 561.240 kb on - strand, within Dsui_0560 at 561.245 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.253 kb on - strand at 561.253 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.261 kb on - strand at 561.266 kb on + strand at 561.266 kb on + strand at 561.266 kb on + strand at 561.267 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.276 kb on + strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.281 kb on + strand at 561.281 kb on + strand at 561.281 kb on + strand at 561.284 kb on - strand at 561.287 kb on - strand at 561.288 kb on + strand at 561.288 kb on + strand at 561.289 kb on - strand at 561.289 kb on - strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.298 kb on - strand at 561.298 kb on - strand at 561.300 kb on + strand at 561.300 kb on + strand at 561.308 kb on - strand at 561.323 kb on - strand at 561.362 kb on - strand at 561.362 kb on - strand at 561.382 kb on - strand at 561.382 kb on - strand at 561.438 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 559,172 - Dsui_0558 0.45 -0.7 559,224 + Dsui_0558 0.48 -0.9 559,284 + Dsui_0558 0.52 +0.5 559,321 - Dsui_0558 0.55 +0.0 559,362 - Dsui_0558 0.58 -0.9 559,368 - Dsui_0558 0.58 +0.1 559,535 + +1.1 559,543 - -0.2 559,593 + +0.1 559,601 - +2.1 559,651 - +1.8 559,651 - +1.7 559,674 - +1.1 559,705 - Dsui_0558 0.81 +0.4 559,901 + -1.4 559,903 - +1.6 559,970 - +0.4 560,050 - -0.2 560,052 + +0.1 560,073 + +0.4 560,115 - -0.4 560,152 + +1.0 560,160 - +0.5 560,160 - +3.1 560,183 - +0.3 560,206 - Dsui_0559 0.15 -0.2 560,250 - Dsui_0559 0.28 -1.4 560,287 + Dsui_0559 0.39 -0.8 560,287 + Dsui_0559 0.39 -0.4 560,295 - Dsui_0559 0.41 +1.1 560,372 - Dsui_0559 0.64 -1.0 560,403 - Dsui_0559 0.73 +0.4 560,486 + +0.6 560,494 - -0.9 560,494 - +0.4 560,499 + -0.7 560,499 - +0.1 560,615 - -0.4 560,656 + +0.1 560,656 + -0.3 560,773 + +0.5 560,773 + -1.9 560,773 + +1.0 560,789 - -0.2 560,832 + +1.1 560,867 - -0.8 560,873 + +0.1 560,881 - +1.9 560,881 - +0.1 560,897 + +0.3 560,905 - Dsui_0560 0.10 -0.6 560,926 - Dsui_0560 0.15 +0.4 560,998 - Dsui_0560 0.32 -0.5 561,042 + Dsui_0560 0.42 -0.3 561,042 + Dsui_0560 0.42 +0.6 561,050 - Dsui_0560 0.44 +0.5 561,050 - Dsui_0560 0.44 -0.1 561,102 - Dsui_0560 0.56 -0.1 561,108 + Dsui_0560 0.58 +0.3 561,108 + Dsui_0560 0.58 -1.4 561,116 - Dsui_0560 0.59 -0.1 561,119 + Dsui_0560 0.60 +0.5 561,139 + Dsui_0560 0.65 +0.3 561,147 - Dsui_0560 0.67 +0.5 561,154 + Dsui_0560 0.68 -1.2 561,164 + Dsui_0560 0.71 -0.4 561,172 - Dsui_0560 0.72 +0.3 561,195 - Dsui_0560 0.78 +0.8 561,198 - Dsui_0560 0.79 -0.3 561,218 - Dsui_0560 0.83 -0.3 561,222 + Dsui_0560 0.84 +0.4 561,222 + Dsui_0560 0.84 -1.0 561,230 - Dsui_0560 0.86 +0.6 561,230 - Dsui_0560 0.86 +0.1 561,231 + Dsui_0560 0.86 -0.3 561,238 + Dsui_0560 0.88 +0.1 561,240 - Dsui_0560 0.88 +0.3 561,240 - Dsui_0560 0.88 -0.4 561,245 + Dsui_0560 0.90 -0.9 561,246 + Dsui_0560 0.90 +2.1 561,246 + Dsui_0560 0.90 +0.1 561,246 + Dsui_0560 0.90 +0.7 561,246 + Dsui_0560 0.90 -0.1 561,246 + Dsui_0560 0.90 -1.7 561,253 - -0.3 561,253 - +0.3 561,254 - -0.6 561,254 - +0.5 561,254 - -0.6 561,254 - +0.1 561,254 - -0.3 561,254 - -0.1 561,261 - +1.1 561,266 + -0.8 561,266 + -0.2 561,266 + +0.1 561,267 + -0.4 561,268 + -0.2 561,268 + +0.3 561,268 + -0.4 561,268 + -0.7 561,268 + +0.7 561,268 + -0.4 561,268 + +0.6 561,274 - +0.5 561,274 - +0.1 561,274 - +0.8 561,274 - -0.3 561,274 - -0.7 561,274 - -0.3 561,274 - -0.5 561,274 - -0.3 561,276 + -0.2 561,276 - -0.2 561,276 - +1.6 561,276 - -1.1 561,276 - -0.1 561,276 - -0.6 561,276 - +1.1 561,276 - -0.0 561,276 - -1.2 561,276 - +0.1 561,276 - -0.2 561,276 - +1.1 561,281 + -1.9 561,281 + -1.8 561,281 + +1.4 561,284 - -0.0 561,287 - +1.5 561,288 + -1.3 561,288 + +0.6 561,289 - -0.2 561,289 - +0.6 561,290 + +1.6 561,290 + -0.1 561,290 + -0.5 561,290 + -0.1 561,290 + +0.2 561,290 + -1.4 561,298 - +1.1 561,298 - +0.1 561,300 + -0.4 561,300 + +0.8 561,308 - +0.3 561,323 - -0.0 561,362 - -0.2 561,362 - +0.4 561,382 - -0.2 561,382 - +0.1 561,438 + +1.7
Or see this region's nucleotide sequence