Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0504 and Dsui_0505 are separated by 55 nucleotides Dsui_0505 and Dsui_0506 are separated by 51 nucleotides Dsui_0506 and Dsui_0507 are separated by 301 nucleotides Dsui_0507 and Dsui_0508 are separated by 1 nucleotides
Dsui_0504: Dsui_0504 - putative membrane protein, at 506,470 to 507,375
_0504
Dsui_0505: Dsui_0505 - 7-cyano-7-deazaguanine reductase, at 507,431 to 508,264
_0505
Dsui_0506: Dsui_0506 - diguanylate cyclase (GGDEF) domain-containing protein, at 508,316 to 510,517
_0506
Dsui_0507: Dsui_0507 - uncharacterized protein involved in formation of periplasmic nitrate reductase, at 510,819 to 511,067
_0507
Dsui_0508: Dsui_0508 - periplasmic nitrate reductase, large subunit, at 511,069 to 513,594
_0508
Position (kb)
508
509
510
511 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 507.351 kb on + strand at 507.352 kb on + strand at 507.357 kb on + strand at 507.365 kb on - strand at 507.369 kb on + strand at 507.369 kb on + strand at 507.503 kb on - strand at 507.622 kb on + strand, within Dsui_0505 at 507.622 kb on + strand, within Dsui_0505 at 507.640 kb on - strand at 507.669 kb on + strand, within Dsui_0505 at 507.669 kb on + strand, within Dsui_0505 at 507.677 kb on - strand, within Dsui_0505 at 507.693 kb on + strand, within Dsui_0505 at 507.706 kb on + strand, within Dsui_0505 at 507.714 kb on + strand, within Dsui_0505 at 507.721 kb on + strand, within Dsui_0505 at 507.728 kb on + strand, within Dsui_0505 at 507.871 kb on - strand at 507.967 kb on + strand, within Dsui_0505 at 508.034 kb on - strand, within Dsui_0505 at 508.037 kb on + strand, within Dsui_0505 at 508.105 kb on + strand, within Dsui_0505 at 508.148 kb on + strand, within Dsui_0505 at 508.153 kb on + strand, within Dsui_0505 at 508.161 kb on - strand, within Dsui_0505 at 508.442 kb on - strand at 508.457 kb on + strand at 508.465 kb on - strand at 508.488 kb on - strand at 508.552 kb on + strand, within Dsui_0506 at 508.559 kb on - strand, within Dsui_0506 at 508.577 kb on - strand, within Dsui_0506 at 508.599 kb on - strand, within Dsui_0506 at 508.635 kb on + strand, within Dsui_0506 at 508.649 kb on + strand, within Dsui_0506 at 508.649 kb on + strand, within Dsui_0506 at 508.657 kb on - strand, within Dsui_0506 at 508.757 kb on - strand, within Dsui_0506 at 508.895 kb on + strand, within Dsui_0506 at 508.978 kb on - strand, within Dsui_0506 at 508.993 kb on + strand at 508.993 kb on + strand, within Dsui_0506 at 508.993 kb on + strand, within Dsui_0506 at 508.993 kb on + strand, within Dsui_0506 at 508.993 kb on + strand, within Dsui_0506 at 509.065 kb on + strand, within Dsui_0506 at 509.159 kb on - strand, within Dsui_0506 at 509.238 kb on + strand, within Dsui_0506 at 509.238 kb on + strand, within Dsui_0506 at 509.246 kb on - strand, within Dsui_0506 at 509.306 kb on + strand, within Dsui_0506 at 509.306 kb on - strand, within Dsui_0506 at 509.400 kb on - strand, within Dsui_0506 at 509.407 kb on - strand, within Dsui_0506 at 509.438 kb on + strand, within Dsui_0506 at 509.443 kb on + strand, within Dsui_0506 at 509.443 kb on + strand, within Dsui_0506 at 509.443 kb on + strand, within Dsui_0506 at 509.443 kb on + strand, within Dsui_0506 at 509.443 kb on + strand at 509.459 kb on + strand, within Dsui_0506 at 509.467 kb on - strand, within Dsui_0506 at 509.490 kb on + strand, within Dsui_0506 at 509.498 kb on - strand, within Dsui_0506 at 509.498 kb on - strand, within Dsui_0506 at 509.582 kb on + strand, within Dsui_0506 at 509.670 kb on - strand, within Dsui_0506 at 509.722 kb on - strand, within Dsui_0506 at 509.751 kb on - strand, within Dsui_0506 at 509.809 kb on - strand, within Dsui_0506 at 509.814 kb on + strand, within Dsui_0506 at 509.822 kb on - strand, within Dsui_0506 at 509.932 kb on + strand at 509.932 kb on + strand, within Dsui_0506 at 509.932 kb on + strand, within Dsui_0506 at 509.935 kb on - strand, within Dsui_0506 at 509.940 kb on - strand, within Dsui_0506 at 509.980 kb on + strand, within Dsui_0506 at 510.058 kb on - strand, within Dsui_0506 at 510.097 kb on - strand, within Dsui_0506 at 510.134 kb on - strand, within Dsui_0506 at 510.139 kb on + strand, within Dsui_0506 at 510.147 kb on - strand, within Dsui_0506 at 510.282 kb on + strand, within Dsui_0506 at 510.287 kb on + strand at 510.290 kb on - strand, within Dsui_0506 at 510.325 kb on - strand at 510.334 kb on + strand at 510.334 kb on + strand at 510.342 kb on - strand at 510.361 kb on + strand at 510.361 kb on + strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.409 kb on + strand at 510.452 kb on + strand at 510.512 kb on + strand at 510.512 kb on + strand at 510.512 kb on + strand at 510.512 kb on + strand at 510.600 kb on - strand at 510.644 kb on + strand at 510.659 kb on + strand at 510.699 kb on - strand at 510.699 kb on - strand at 510.754 kb on + strand at 510.762 kb on - strand at 510.762 kb on - strand at 510.773 kb on - strand at 510.847 kb on - strand, within Dsui_0507 at 510.879 kb on + strand, within Dsui_0507 at 510.916 kb on + strand, within Dsui_0507 at 510.979 kb on + strand, within Dsui_0507 at 511.022 kb on - strand, within Dsui_0507 at 511.072 kb on + strand at 511.314 kb on - strand at 511.317 kb on + strand at 511.366 kb on + strand, within Dsui_0508 at 511.430 kb on + strand, within Dsui_0508 at 511.464 kb on + strand, within Dsui_0508
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 507,351 + +0.4 507,352 + -0.1 507,357 + -0.6 507,365 - -0.9 507,369 + -0.0 507,369 + -0.2 507,503 - +1.1 507,622 + Dsui_0505 0.23 -1.2 507,622 + Dsui_0505 0.23 -1.3 507,640 - -0.4 507,669 + Dsui_0505 0.29 -0.5 507,669 + Dsui_0505 0.29 -0.3 507,677 - Dsui_0505 0.29 -0.6 507,693 + Dsui_0505 0.31 +0.4 507,706 + Dsui_0505 0.33 -0.1 507,714 + Dsui_0505 0.34 -0.2 507,721 + Dsui_0505 0.35 +0.3 507,728 + Dsui_0505 0.36 -0.4 507,871 - +0.8 507,967 + Dsui_0505 0.64 -1.5 508,034 - Dsui_0505 0.72 -0.5 508,037 + Dsui_0505 0.73 +0.6 508,105 + Dsui_0505 0.81 -0.7 508,148 + Dsui_0505 0.86 -2.1 508,153 + Dsui_0505 0.87 -0.9 508,161 - Dsui_0505 0.88 -0.4 508,442 - -2.3 508,457 + -0.4 508,465 - +0.2 508,488 - -0.6 508,552 + Dsui_0506 0.11 -0.2 508,559 - Dsui_0506 0.11 +0.4 508,577 - Dsui_0506 0.12 +0.7 508,599 - Dsui_0506 0.13 +0.3 508,635 + Dsui_0506 0.14 -0.1 508,649 + Dsui_0506 0.15 +0.2 508,649 + Dsui_0506 0.15 +0.7 508,657 - Dsui_0506 0.15 +0.2 508,757 - Dsui_0506 0.20 -0.3 508,895 + Dsui_0506 0.26 +1.1 508,978 - Dsui_0506 0.30 +0.2 508,993 + -0.2 508,993 + Dsui_0506 0.31 -0.0 508,993 + Dsui_0506 0.31 -0.0 508,993 + Dsui_0506 0.31 +0.6 508,993 + Dsui_0506 0.31 +0.5 509,065 + Dsui_0506 0.34 -0.3 509,159 - Dsui_0506 0.38 +0.5 509,238 + Dsui_0506 0.42 -0.1 509,238 + Dsui_0506 0.42 -0.7 509,246 - Dsui_0506 0.42 -0.0 509,306 + Dsui_0506 0.45 +1.0 509,306 - Dsui_0506 0.45 +0.4 509,400 - Dsui_0506 0.49 +0.1 509,407 - Dsui_0506 0.50 -0.1 509,438 + Dsui_0506 0.51 +0.4 509,443 + Dsui_0506 0.51 +0.5 509,443 + Dsui_0506 0.51 +0.7 509,443 + Dsui_0506 0.51 +0.5 509,443 + Dsui_0506 0.51 +0.6 509,443 + +0.6 509,459 + Dsui_0506 0.52 +0.9 509,467 - Dsui_0506 0.52 -0.1 509,490 + Dsui_0506 0.53 -0.1 509,498 - Dsui_0506 0.54 +0.3 509,498 - Dsui_0506 0.54 +0.1 509,582 + Dsui_0506 0.57 -0.0 509,670 - Dsui_0506 0.61 -0.3 509,722 - Dsui_0506 0.64 +0.7 509,751 - Dsui_0506 0.65 +0.5 509,809 - Dsui_0506 0.68 +0.8 509,814 + Dsui_0506 0.68 -0.0 509,822 - Dsui_0506 0.68 -0.5 509,932 + -0.0 509,932 + Dsui_0506 0.73 +0.2 509,932 + Dsui_0506 0.73 -1.0 509,935 - Dsui_0506 0.74 +0.1 509,940 - Dsui_0506 0.74 -0.8 509,980 + Dsui_0506 0.76 +0.4 510,058 - Dsui_0506 0.79 +0.3 510,097 - Dsui_0506 0.81 +0.0 510,134 - Dsui_0506 0.83 -0.3 510,139 + Dsui_0506 0.83 +0.7 510,147 - Dsui_0506 0.83 +0.4 510,282 + Dsui_0506 0.89 -1.1 510,287 + +1.7 510,290 - Dsui_0506 0.90 -0.2 510,325 - +1.2 510,334 + +2.1 510,334 + -0.6 510,342 - -0.1 510,361 + -0.3 510,361 + +0.5 510,369 - +0.3 510,369 - +0.3 510,369 - -1.8 510,369 - -0.8 510,369 - +2.1 510,409 + +1.1 510,452 + +0.8 510,512 + +0.0 510,512 + -1.9 510,512 + +0.1 510,512 + +0.3 510,600 - -0.5 510,644 + -0.2 510,659 + +0.2 510,699 - +1.5 510,699 - +1.3 510,754 + -1.7 510,762 - -1.6 510,762 - +2.1 510,773 - -2.1 510,847 - Dsui_0507 0.11 -0.7 510,879 + Dsui_0507 0.24 -3.9 510,916 + Dsui_0507 0.39 -0.4 510,979 + Dsui_0507 0.64 +1.1 511,022 - Dsui_0507 0.82 -2.0 511,072 + -3.1 511,314 - -1.5 511,317 + +0.6 511,366 + Dsui_0508 0.12 -4.0 511,430 + Dsui_0508 0.14 -3.1 511,464 + Dsui_0508 0.16 -2.2
Or see this region's nucleotide sequence