Experiment: Tween 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0789 and valS are separated by 104 nucleotides valS and Sama_0791 are separated by 15 nucleotides Sama_0791 and Sama_0792 are separated by 130 nucleotides
Sama_0789: Sama_0789 - aspartate ammonia-lyase (RefSeq), at 971,562 to 972,980
_0789
Sama_0790: valS - valyl-tRNA synthetase (RefSeq), at 973,085 to 975,946
valS
Sama_0791: Sama_0791 - DNA polymerase III, chi subunit (RefSeq), at 975,962 to 976,417
_0791
Sama_0792: Sama_0792 - TetR family transcriptional regulator (RefSeq), at 976,548 to 977,186
_0792
Position (kb) 973
974
975
976 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 972.095 kb on + strand, within Sama_0789 at 972.185 kb on + strand, within Sama_0789 at 972.185 kb on + strand, within Sama_0789 at 972.185 kb on + strand, within Sama_0789 at 972.196 kb on + strand, within Sama_0789 at 972.196 kb on + strand, within Sama_0789 at 972.196 kb on + strand, within Sama_0789 at 972.196 kb on + strand, within Sama_0789 at 972.267 kb on - strand, within Sama_0789 at 972.269 kb on + strand, within Sama_0789 at 972.285 kb on + strand, within Sama_0789 at 972.285 kb on + strand, within Sama_0789 at 972.301 kb on + strand, within Sama_0789 at 972.320 kb on + strand, within Sama_0789 at 972.404 kb on + strand, within Sama_0789 at 972.404 kb on + strand, within Sama_0789 at 972.437 kb on + strand, within Sama_0789 at 972.545 kb on + strand, within Sama_0789 at 972.660 kb on + strand, within Sama_0789 at 972.662 kb on + strand, within Sama_0789 at 972.674 kb on + strand, within Sama_0789 at 972.674 kb on + strand, within Sama_0789 at 972.722 kb on + strand, within Sama_0789 at 972.784 kb on + strand, within Sama_0789 at 972.784 kb on + strand, within Sama_0789 at 972.784 kb on + strand, within Sama_0789 at 972.784 kb on + strand, within Sama_0789 at 972.784 kb on + strand, within Sama_0789 at 972.785 kb on - strand, within Sama_0789 at 972.896 kb on + strand at 972.923 kb on - strand at 972.999 kb on - strand at 973.069 kb on + strand at 973.070 kb on - strand at 973.070 kb on - strand at 973.070 kb on - strand at 973.070 kb on - strand at 973.076 kb on + strand at 973.076 kb on + strand at 973.076 kb on + strand at 973.076 kb on + strand at 973.076 kb on + strand at 973.076 kb on + strand at 973.076 kb on + strand at 973.077 kb on - strand at 973.077 kb on - strand at 973.077 kb on - strand at 975.969 kb on - strand at 976.119 kb on - strand, within Sama_0791 at 976.306 kb on + strand, within Sama_0791 at 976.306 kb on + strand, within Sama_0791 at 976.306 kb on + strand, within Sama_0791 at 976.307 kb on - strand, within Sama_0791 at 976.307 kb on - strand, within Sama_0791 at 976.308 kb on + strand, within Sama_0791 at 976.308 kb on + strand, within Sama_0791 at 976.308 kb on + strand, within Sama_0791 at 976.309 kb on - strand, within Sama_0791 at 976.309 kb on - strand, within Sama_0791 at 976.309 kb on - strand, within Sama_0791 at 976.394 kb on + strand at 976.394 kb on + strand at 976.394 kb on + strand at 976.395 kb on - strand at 976.395 kb on - strand at 976.395 kb on - strand at 976.398 kb on + strand at 976.398 kb on + strand at 976.398 kb on + strand at 976.399 kb on - strand at 976.399 kb on - strand at 976.433 kb on - strand at 976.433 kb on - strand at 976.448 kb on - strand at 976.454 kb on + strand at 976.454 kb on + strand at 976.454 kb on + strand at 976.454 kb on + strand at 976.454 kb on + strand at 976.454 kb on + strand at 976.455 kb on - strand at 976.455 kb on - strand at 976.455 kb on - strand at 976.467 kb on + strand at 976.468 kb on - strand at 976.472 kb on + strand at 976.472 kb on + strand at 976.472 kb on + strand at 976.472 kb on + strand at 976.473 kb on - strand at 976.473 kb on - strand at 976.473 kb on - strand at 976.473 kb on - strand at 976.473 kb on - strand at 976.473 kb on - strand at 976.489 kb on + strand at 976.489 kb on + strand at 976.489 kb on + strand at 976.549 kb on + strand at 976.549 kb on + strand at 976.550 kb on - strand at 976.550 kb on - strand at 976.550 kb on - strand at 976.550 kb on - strand at 976.550 kb on - strand at 976.550 kb on - strand at 976.563 kb on + strand at 976.567 kb on + strand at 976.568 kb on - strand at 976.568 kb on - strand at 976.673 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.691 kb on + strand, within Sama_0792 at 976.692 kb on - strand, within Sama_0792 at 976.692 kb on - strand, within Sama_0792 at 976.692 kb on - strand, within Sama_0792 at 976.692 kb on - strand, within Sama_0792 at 976.692 kb on - strand, within Sama_0792 at 976.737 kb on - strand, within Sama_0792 at 976.802 kb on + strand, within Sama_0792 at 976.802 kb on + strand, within Sama_0792 at 976.802 kb on + strand, within Sama_0792 at 976.803 kb on - strand, within Sama_0792 at 976.803 kb on - strand, within Sama_0792 at 976.803 kb on - strand, within Sama_0792 at 976.803 kb on - strand, within Sama_0792 at 976.823 kb on + strand, within Sama_0792 at 976.823 kb on + strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.824 kb on - strand, within Sama_0792 at 976.893 kb on - strand, within Sama_0792 at 976.893 kb on - strand, within Sama_0792 at 976.893 kb on - strand, within Sama_0792 at 976.893 kb on - strand, within Sama_0792 at 976.897 kb on - strand, within Sama_0792 at 976.897 kb on - strand, within Sama_0792 at 976.941 kb on + strand, within Sama_0792 at 976.942 kb on - strand, within Sama_0792 at 976.942 kb on - strand, within Sama_0792 at 976.942 kb on - strand, within Sama_0792 at 976.942 kb on - strand, within Sama_0792
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 remove 972,095 + Sama_0789 0.38 +1.0 972,185 + Sama_0789 0.44 +0.2 972,185 + Sama_0789 0.44 +1.0 972,185 + Sama_0789 0.44 +0.6 972,196 + Sama_0789 0.45 -1.7 972,196 + Sama_0789 0.45 -0.3 972,196 + Sama_0789 0.45 -0.7 972,196 + Sama_0789 0.45 -0.0 972,267 - Sama_0789 0.50 -1.2 972,269 + Sama_0789 0.50 +0.9 972,285 + Sama_0789 0.51 +0.6 972,285 + Sama_0789 0.51 +0.6 972,301 + Sama_0789 0.52 -0.3 972,320 + Sama_0789 0.53 +0.0 972,404 + Sama_0789 0.59 -1.4 972,404 + Sama_0789 0.59 -1.2 972,437 + Sama_0789 0.62 -0.8 972,545 + Sama_0789 0.69 +0.3 972,660 + Sama_0789 0.77 -0.0 972,662 + Sama_0789 0.78 -2.7 972,674 + Sama_0789 0.78 -0.1 972,674 + Sama_0789 0.78 -0.8 972,722 + Sama_0789 0.82 +0.4 972,784 + Sama_0789 0.86 -0.0 972,784 + Sama_0789 0.86 +0.7 972,784 + Sama_0789 0.86 -2.0 972,784 + Sama_0789 0.86 -0.4 972,784 + Sama_0789 0.86 -1.4 972,785 - Sama_0789 0.86 -0.7 972,896 + -0.2 972,923 - +0.6 972,999 - -1.4 973,069 + +0.6 973,070 - -0.0 973,070 - +1.0 973,070 - -0.6 973,070 - +1.2 973,076 + +0.2 973,076 + +0.1 973,076 + -0.1 973,076 + -1.5 973,076 + +0.3 973,076 + +1.0 973,076 + -0.1 973,077 - -2.4 973,077 - +0.6 973,077 - +0.2 975,969 - -3.8 976,119 - Sama_0791 0.34 +0.3 976,306 + Sama_0791 0.75 +0.8 976,306 + Sama_0791 0.75 -0.0 976,306 + Sama_0791 0.75 -1.0 976,307 - Sama_0791 0.76 -0.1 976,307 - Sama_0791 0.76 -0.5 976,308 + Sama_0791 0.76 +0.0 976,308 + Sama_0791 0.76 +1.0 976,308 + Sama_0791 0.76 +0.2 976,309 - Sama_0791 0.76 -0.8 976,309 - Sama_0791 0.76 -1.4 976,309 - Sama_0791 0.76 +0.9 976,394 + -0.0 976,394 + +0.3 976,394 + -0.5 976,395 - -0.4 976,395 - +0.0 976,395 - +0.8 976,398 + -0.4 976,398 + +0.0 976,398 + +0.8 976,399 - -0.3 976,399 - +0.6 976,433 - +0.5 976,433 - +0.8 976,448 - -0.3 976,454 + -0.9 976,454 + +0.4 976,454 + -0.3 976,454 + +0.9 976,454 + +0.9 976,454 + -0.0 976,455 - -0.7 976,455 - +0.2 976,455 - -0.1 976,467 + -1.4 976,468 - -0.0 976,472 + +0.7 976,472 + +0.5 976,472 + +1.4 976,472 + -0.5 976,473 - +0.9 976,473 - +0.4 976,473 - +0.4 976,473 - +0.4 976,473 - -2.3 976,473 - +1.5 976,489 + +0.4 976,489 + -0.5 976,489 + -1.3 976,549 + -0.6 976,549 + -0.1 976,550 - -0.6 976,550 - -0.7 976,550 - +0.1 976,550 - -0.6 976,550 - -1.7 976,550 - +0.3 976,563 + -0.7 976,567 + +1.5 976,568 - +1.1 976,568 - +1.9 976,673 + Sama_0792 0.20 +2.5 976,691 + Sama_0792 0.22 +1.3 976,691 + Sama_0792 0.22 +1.7 976,691 + Sama_0792 0.22 +3.6 976,691 + Sama_0792 0.22 +2.1 976,691 + Sama_0792 0.22 +1.8 976,691 + Sama_0792 0.22 +2.8 976,692 - Sama_0792 0.23 +1.6 976,692 - Sama_0792 0.23 +1.0 976,692 - Sama_0792 0.23 +0.8 976,692 - Sama_0792 0.23 +1.7 976,692 - Sama_0792 0.23 +2.1 976,737 - Sama_0792 0.30 +2.1 976,802 + Sama_0792 0.40 +1.0 976,802 + Sama_0792 0.40 +1.9 976,802 + Sama_0792 0.40 -0.4 976,803 - Sama_0792 0.40 +1.5 976,803 - Sama_0792 0.40 +1.4 976,803 - Sama_0792 0.40 -0.2 976,803 - Sama_0792 0.40 +1.5 976,823 + Sama_0792 0.43 +1.0 976,823 + Sama_0792 0.43 +2.2 976,824 - Sama_0792 0.43 +1.1 976,824 - Sama_0792 0.43 +1.9 976,824 - Sama_0792 0.43 +2.0 976,824 - Sama_0792 0.43 +1.6 976,824 - Sama_0792 0.43 +1.6 976,824 - Sama_0792 0.43 +1.2 976,824 - Sama_0792 0.43 +2.5 976,893 - Sama_0792 0.54 +1.1 976,893 - Sama_0792 0.54 +1.8 976,893 - Sama_0792 0.54 +0.4 976,893 - Sama_0792 0.54 +1.1 976,897 - Sama_0792 0.55 +1.1 976,897 - Sama_0792 0.55 +1.6 976,941 + Sama_0792 0.62 +1.8 976,942 - Sama_0792 0.62 +1.8 976,942 - Sama_0792 0.62 +1.8 976,942 - Sama_0792 0.62 +2.6 976,942 - Sama_0792 0.62 +2.3
Or see this region's nucleotide sequence