Experiment: Tween 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0054 and Sama_R0001 are separated by 455 nucleotides Sama_R0001 and Sama_R0002 are separated by 266 nucleotides
Sama_0054: Sama_0054 - carbonic anhydrase (RefSeq), at 55,153 to 55,701
_0054
Sama_R0001: Sama_R0001 - 16S ribosomal RNA (RefSeq), at 56,157 to 57,693
_R0001
Sama_R0002: Sama_R0002 - 23S ribosomal RNA (RefSeq), at 57,960 to 60,873
_R0002
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 55.178 kb on + strand at 55.178 kb on + strand at 55.179 kb on - strand at 55.179 kb on - strand at 55.179 kb on - strand at 55.199 kb on + strand at 55.199 kb on + strand at 55.199 kb on + strand at 55.199 kb on + strand at 55.199 kb on + strand at 55.199 kb on + strand at 55.199 kb on + strand at 55.199 kb on + strand at 55.200 kb on - strand at 55.200 kb on - strand at 55.200 kb on - strand at 55.200 kb on - strand at 55.227 kb on + strand, within Sama_0054 at 55.228 kb on - strand, within Sama_0054 at 55.273 kb on + strand, within Sama_0054 at 55.273 kb on + strand, within Sama_0054 at 55.273 kb on + strand, within Sama_0054 at 55.274 kb on - strand, within Sama_0054 at 55.274 kb on - strand, within Sama_0054 at 55.277 kb on + strand, within Sama_0054 at 55.277 kb on + strand, within Sama_0054 at 55.277 kb on + strand, within Sama_0054 at 55.277 kb on + strand, within Sama_0054 at 55.278 kb on - strand, within Sama_0054 at 55.278 kb on - strand, within Sama_0054 at 55.278 kb on - strand, within Sama_0054 at 55.278 kb on - strand, within Sama_0054 at 55.278 kb on - strand, within Sama_0054 at 55.284 kb on - strand, within Sama_0054 at 55.284 kb on - strand, within Sama_0054 at 55.297 kb on + strand, within Sama_0054 at 55.297 kb on + strand, within Sama_0054 at 55.297 kb on + strand, within Sama_0054 at 55.297 kb on + strand, within Sama_0054 at 55.298 kb on - strand, within Sama_0054 at 55.298 kb on - strand, within Sama_0054 at 55.298 kb on - strand, within Sama_0054 at 55.298 kb on - strand, within Sama_0054 at 55.363 kb on + strand, within Sama_0054 at 55.363 kb on + strand, within Sama_0054 at 55.363 kb on + strand, within Sama_0054 at 55.363 kb on + strand, within Sama_0054 at 55.363 kb on + strand, within Sama_0054 at 55.363 kb on + strand, within Sama_0054 at 55.363 kb on + strand, within Sama_0054 at 55.364 kb on - strand, within Sama_0054 at 55.364 kb on - strand, within Sama_0054 at 55.364 kb on - strand, within Sama_0054 at 55.364 kb on - strand, within Sama_0054 at 55.364 kb on - strand, within Sama_0054 at 55.364 kb on - strand, within Sama_0054 at 55.366 kb on + strand, within Sama_0054 at 55.366 kb on + strand, within Sama_0054 at 55.366 kb on + strand, within Sama_0054 at 55.367 kb on - strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.380 kb on + strand, within Sama_0054 at 55.381 kb on - strand, within Sama_0054 at 55.381 kb on - strand, within Sama_0054 at 55.381 kb on - strand, within Sama_0054 at 55.381 kb on - strand, within Sama_0054 at 55.381 kb on - strand, within Sama_0054 at 55.381 kb on - strand, within Sama_0054 at 55.381 kb on - strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.384 kb on + strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.385 kb on - strand, within Sama_0054 at 55.386 kb on - strand, within Sama_0054 at 55.391 kb on - strand, within Sama_0054 at 55.422 kb on + strand, within Sama_0054 at 55.422 kb on + strand, within Sama_0054 at 55.422 kb on + strand, within Sama_0054 at 55.422 kb on + strand, within Sama_0054 at 55.422 kb on + strand, within Sama_0054 at 55.422 kb on + strand, within Sama_0054 at 55.422 kb on + strand, within Sama_0054 at 55.423 kb on - strand, within Sama_0054 at 55.423 kb on - strand, within Sama_0054 at 55.423 kb on - strand, within Sama_0054 at 55.455 kb on + strand, within Sama_0054 at 55.455 kb on + strand, within Sama_0054 at 55.456 kb on - strand, within Sama_0054 at 55.456 kb on - strand, within Sama_0054 at 55.456 kb on - strand, within Sama_0054 at 55.491 kb on + strand, within Sama_0054 at 55.492 kb on - strand, within Sama_0054 at 55.504 kb on + strand, within Sama_0054 at 55.504 kb on + strand, within Sama_0054 at 55.505 kb on - strand, within Sama_0054 at 55.536 kb on + strand, within Sama_0054 at 55.536 kb on + strand, within Sama_0054 at 55.537 kb on - strand, within Sama_0054 at 55.542 kb on + strand, within Sama_0054 at 55.543 kb on - strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.639 kb on + strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.640 kb on - strand, within Sama_0054 at 55.641 kb on + strand, within Sama_0054 at 55.641 kb on + strand, within Sama_0054 at 55.642 kb on - strand, within Sama_0054 at 55.642 kb on - strand, within Sama_0054 at 55.642 kb on - strand, within Sama_0054 at 55.642 kb on - strand, within Sama_0054 at 55.643 kb on + strand, within Sama_0054 at 55.643 kb on + strand, within Sama_0054 at 55.643 kb on + strand, within Sama_0054 at 55.643 kb on + strand, within Sama_0054 at 55.643 kb on + strand, within Sama_0054 at 55.643 kb on + strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.644 kb on - strand, within Sama_0054 at 55.662 kb on + strand at 55.663 kb on - strand at 55.663 kb on - strand at 55.663 kb on - strand at 55.678 kb on - strand at 55.678 kb on - strand at 55.678 kb on - strand at 55.679 kb on + strand at 55.679 kb on + strand at 55.679 kb on + strand at 55.679 kb on + strand at 55.680 kb on - strand at 55.680 kb on - strand at 55.702 kb on - strand at 55.713 kb on + strand at 55.714 kb on - strand at 55.734 kb on + strand at 55.734 kb on + strand at 55.735 kb on - strand at 55.735 kb on - strand at 55.736 kb on + strand at 55.736 kb on + strand at 55.736 kb on + strand at 55.736 kb on + strand at 55.736 kb on + strand at 55.737 kb on - strand at 55.737 kb on - strand at 55.737 kb on - strand at 55.737 kb on - strand at 55.737 kb on - strand at 55.737 kb on - strand at 55.802 kb on - strand at 55.836 kb on - strand at 55.836 kb on - strand at 55.836 kb on - strand at 55.836 kb on - strand at 55.838 kb on - strand at 55.838 kb on - strand at 56.580 kb on + strand, within Sama_R0001 at 56.580 kb on + strand, within Sama_R0001 at 56.615 kb on + strand, within Sama_R0001 at 56.615 kb on + strand, within Sama_R0001 at 56.615 kb on + strand, within Sama_R0001 at 56.618 kb on + strand, within Sama_R0001 at 56.618 kb on + strand, within Sama_R0001 at 56.618 kb on + strand, within Sama_R0001 at 56.618 kb on + strand, within Sama_R0001
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 remove 55,178 + +0.0 55,178 + +0.2 55,179 - +0.5 55,179 - +0.2 55,179 - -0.3 55,199 + -1.6 55,199 + +0.4 55,199 + +0.6 55,199 + -0.6 55,199 + +0.5 55,199 + +0.0 55,199 + +0.4 55,199 + +0.3 55,200 - +0.1 55,200 - +1.0 55,200 - -0.6 55,200 - +0.2 55,227 + Sama_0054 0.13 -1.1 55,228 - Sama_0054 0.14 +0.2 55,273 + Sama_0054 0.22 +0.2 55,273 + Sama_0054 0.22 +1.2 55,273 + Sama_0054 0.22 +0.3 55,274 - Sama_0054 0.22 +0.3 55,274 - Sama_0054 0.22 -0.3 55,277 + Sama_0054 0.23 -0.2 55,277 + Sama_0054 0.23 +0.5 55,277 + Sama_0054 0.23 -1.0 55,277 + Sama_0054 0.23 -0.4 55,278 - Sama_0054 0.23 -0.6 55,278 - Sama_0054 0.23 +0.7 55,278 - Sama_0054 0.23 +0.3 55,278 - Sama_0054 0.23 -3.0 55,278 - Sama_0054 0.23 +0.0 55,284 - Sama_0054 0.24 -0.8 55,284 - Sama_0054 0.24 -1.8 55,297 + Sama_0054 0.26 -0.6 55,297 + Sama_0054 0.26 -1.7 55,297 + Sama_0054 0.26 -2.1 55,297 + Sama_0054 0.26 +1.9 55,298 - Sama_0054 0.26 -1.8 55,298 - Sama_0054 0.26 -1.3 55,298 - Sama_0054 0.26 -3.2 55,298 - Sama_0054 0.26 +0.2 55,363 + Sama_0054 0.38 +0.8 55,363 + Sama_0054 0.38 -0.3 55,363 + Sama_0054 0.38 +0.4 55,363 + Sama_0054 0.38 -1.0 55,363 + Sama_0054 0.38 +0.1 55,363 + Sama_0054 0.38 -0.5 55,363 + Sama_0054 0.38 -0.3 55,364 - Sama_0054 0.38 -0.2 55,364 - Sama_0054 0.38 +1.2 55,364 - Sama_0054 0.38 -2.9 55,364 - Sama_0054 0.38 +0.9 55,364 - Sama_0054 0.38 -0.6 55,364 - Sama_0054 0.38 -0.4 55,366 + Sama_0054 0.39 -1.2 55,366 + Sama_0054 0.39 -0.6 55,366 + Sama_0054 0.39 +1.0 55,367 - Sama_0054 0.39 -0.1 55,380 + Sama_0054 0.41 -1.0 55,380 + Sama_0054 0.41 -0.6 55,380 + Sama_0054 0.41 -0.9 55,380 + Sama_0054 0.41 -0.8 55,380 + Sama_0054 0.41 +0.3 55,380 + Sama_0054 0.41 -1.4 55,380 + Sama_0054 0.41 -0.6 55,380 + Sama_0054 0.41 +0.8 55,380 + Sama_0054 0.41 -1.6 55,380 + Sama_0054 0.41 +0.6 55,380 + Sama_0054 0.41 +1.0 55,381 - Sama_0054 0.42 +0.4 55,381 - Sama_0054 0.42 +0.3 55,381 - Sama_0054 0.42 -0.5 55,381 - Sama_0054 0.42 +0.6 55,381 - Sama_0054 0.42 -0.6 55,381 - Sama_0054 0.42 +1.8 55,381 - Sama_0054 0.42 -0.5 55,384 + Sama_0054 0.42 +0.0 55,384 + Sama_0054 0.42 -0.3 55,384 + Sama_0054 0.42 +0.6 55,384 + Sama_0054 0.42 +1.4 55,384 + Sama_0054 0.42 +0.0 55,384 + Sama_0054 0.42 -1.1 55,384 + Sama_0054 0.42 -0.6 55,384 + Sama_0054 0.42 +0.0 55,384 + Sama_0054 0.42 -0.5 55,384 + Sama_0054 0.42 -0.9 55,384 + Sama_0054 0.42 -0.7 55,385 - Sama_0054 0.42 +1.3 55,385 - Sama_0054 0.42 -0.2 55,385 - Sama_0054 0.42 -1.1 55,385 - Sama_0054 0.42 +1.0 55,385 - Sama_0054 0.42 +0.4 55,385 - Sama_0054 0.42 -0.2 55,385 - Sama_0054 0.42 -0.1 55,385 - Sama_0054 0.42 -0.3 55,385 - Sama_0054 0.42 +0.8 55,385 - Sama_0054 0.42 -0.9 55,385 - Sama_0054 0.42 +0.1 55,385 - Sama_0054 0.42 -0.7 55,385 - Sama_0054 0.42 +0.4 55,385 - Sama_0054 0.42 -0.8 55,386 - Sama_0054 0.42 +0.0 55,391 - Sama_0054 0.43 -0.6 55,422 + Sama_0054 0.49 -1.1 55,422 + Sama_0054 0.49 -0.4 55,422 + Sama_0054 0.49 -1.6 55,422 + Sama_0054 0.49 +1.6 55,422 + Sama_0054 0.49 -0.8 55,422 + Sama_0054 0.49 -1.1 55,422 + Sama_0054 0.49 -1.3 55,423 - Sama_0054 0.49 +2.1 55,423 - Sama_0054 0.49 +1.9 55,423 - Sama_0054 0.49 -0.9 55,455 + Sama_0054 0.55 -0.4 55,455 + Sama_0054 0.55 +0.6 55,456 - Sama_0054 0.55 -0.9 55,456 - Sama_0054 0.55 +0.3 55,456 - Sama_0054 0.55 -0.1 55,491 + Sama_0054 0.62 -1.3 55,492 - Sama_0054 0.62 -0.2 55,504 + Sama_0054 0.64 -1.0 55,504 + Sama_0054 0.64 -2.3 55,505 - Sama_0054 0.64 -0.4 55,536 + Sama_0054 0.70 -1.2 55,536 + Sama_0054 0.70 -1.7 55,537 - Sama_0054 0.70 -0.2 55,542 + Sama_0054 0.71 -1.1 55,543 - Sama_0054 0.71 -0.6 55,639 + Sama_0054 0.89 -1.1 55,639 + Sama_0054 0.89 +1.7 55,639 + Sama_0054 0.89 -0.7 55,639 + Sama_0054 0.89 +0.6 55,639 + Sama_0054 0.89 -0.9 55,639 + Sama_0054 0.89 -0.9 55,639 + Sama_0054 0.89 -0.1 55,639 + Sama_0054 0.89 -0.5 55,639 + Sama_0054 0.89 -0.6 55,639 + Sama_0054 0.89 +2.6 55,639 + Sama_0054 0.89 -0.5 55,639 + Sama_0054 0.89 +0.2 55,639 + Sama_0054 0.89 +0.1 55,639 + Sama_0054 0.89 -1.6 55,639 + Sama_0054 0.89 -0.8 55,639 + Sama_0054 0.89 -0.9 55,639 + Sama_0054 0.89 -0.3 55,639 + Sama_0054 0.89 -0.3 55,639 + Sama_0054 0.89 +0.3 55,639 + Sama_0054 0.89 -0.1 55,640 - Sama_0054 0.89 +0.1 55,640 - Sama_0054 0.89 -1.1 55,640 - Sama_0054 0.89 -0.1 55,640 - Sama_0054 0.89 -0.4 55,640 - Sama_0054 0.89 -1.5 55,640 - Sama_0054 0.89 -0.6 55,640 - Sama_0054 0.89 +1.3 55,640 - Sama_0054 0.89 -1.0 55,640 - Sama_0054 0.89 +0.5 55,640 - Sama_0054 0.89 -0.3 55,640 - Sama_0054 0.89 +1.0 55,640 - Sama_0054 0.89 +0.1 55,640 - Sama_0054 0.89 -0.3 55,640 - Sama_0054 0.89 -2.1 55,640 - Sama_0054 0.89 -0.7 55,640 - Sama_0054 0.89 -0.4 55,640 - Sama_0054 0.89 +1.0 55,640 - Sama_0054 0.89 -1.6 55,640 - Sama_0054 0.89 +0.7 55,640 - Sama_0054 0.89 -1.1 55,640 - Sama_0054 0.89 -1.7 55,640 - Sama_0054 0.89 +1.1 55,640 - Sama_0054 0.89 +0.3 55,640 - Sama_0054 0.89 +0.3 55,640 - Sama_0054 0.89 -0.1 55,640 - Sama_0054 0.89 +1.8 55,640 - Sama_0054 0.89 +0.4 55,640 - Sama_0054 0.89 -0.3 55,640 - Sama_0054 0.89 -0.2 55,640 - Sama_0054 0.89 -0.2 55,641 + Sama_0054 0.89 -0.5 55,641 + Sama_0054 0.89 -0.8 55,642 - Sama_0054 0.89 -0.4 55,642 - Sama_0054 0.89 -0.4 55,642 - Sama_0054 0.89 +0.0 55,642 - Sama_0054 0.89 +0.2 55,643 + Sama_0054 0.89 +0.3 55,643 + Sama_0054 0.89 -1.4 55,643 + Sama_0054 0.89 -1.2 55,643 + Sama_0054 0.89 +0.1 55,643 + Sama_0054 0.89 -0.9 55,643 + Sama_0054 0.89 -0.5 55,644 - Sama_0054 0.89 +0.4 55,644 - Sama_0054 0.89 -0.2 55,644 - Sama_0054 0.89 +1.1 55,644 - Sama_0054 0.89 -0.5 55,644 - Sama_0054 0.89 -1.4 55,644 - Sama_0054 0.89 -0.8 55,644 - Sama_0054 0.89 +3.0 55,644 - Sama_0054 0.89 -0.6 55,644 - Sama_0054 0.89 -0.1 55,662 + -1.1 55,663 - +0.3 55,663 - +0.2 55,663 - -0.9 55,678 - -0.6 55,678 - -0.8 55,678 - -0.6 55,679 + -0.2 55,679 + +0.7 55,679 + +0.9 55,679 + -0.4 55,680 - -0.5 55,680 - +0.2 55,702 - -1.4 55,713 + +0.6 55,714 - -1.6 55,734 + -0.3 55,734 + +0.6 55,735 - -1.1 55,735 - +0.8 55,736 + -0.9 55,736 + +0.0 55,736 + -0.1 55,736 + +0.0 55,736 + -1.6 55,737 - -2.1 55,737 - +0.0 55,737 - +0.9 55,737 - -1.2 55,737 - +0.6 55,737 - -1.3 55,802 - -0.4 55,836 - +1.6 55,836 - -1.1 55,836 - -0.7 55,836 - +0.4 55,838 - -1.0 55,838 - +0.0 56,580 + Sama_R0001 0.28 +0.7 56,580 + Sama_R0001 0.28 +0.4 56,615 + Sama_R0001 0.30 +0.3 56,615 + Sama_R0001 0.30 +0.1 56,615 + Sama_R0001 0.30 +1.1 56,618 + Sama_R0001 0.30 +0.8 56,618 + Sama_R0001 0.30 -1.0 56,618 + Sama_R0001 0.30 +0.6 56,618 + Sama_R0001 0.30 +0.8
Or see this region's nucleotide sequence