Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0898 and SO0899 are separated by 58 nucleotides SO0899 and SO0900 are separated by 147 nucleotides SO0900 and nqrA-1 are separated by 453 nucleotides
SO0898: SO0898 - conserved hypothetical protein (NCBI ptt file), at 926,280 to 926,807
SO0898
SO0899: SO0899 - glyoxalase family protein (NCBI ptt file), at 926,866 to 927,288
SO0899
SO0900: SO0900 - oxidoreductase, aldo/keto reductase family (NCBI ptt file), at 927,436 to 928,476
SO0900
SO0902: nqrA-1 - NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit (NCBI ptt file), at 928,930 to 930,300
nqrA-1
Position (kb) 927
928
929 Strain fitness (log2 ratio) -1
0
1 at 926.443 kb on + strand, within SO0898 at 926.526 kb on + strand, within SO0898 at 926.534 kb on - strand, within SO0898 at 926.578 kb on - strand, within SO0898 at 926.581 kb on + strand, within SO0898 at 926.637 kb on + strand, within SO0898 at 926.645 kb on - strand, within SO0898 at 926.701 kb on - strand, within SO0898 at 926.775 kb on + strand at 926.905 kb on - strand at 927.093 kb on + strand, within SO0899 at 927.098 kb on + strand, within SO0899 at 927.098 kb on + strand, within SO0899 at 927.106 kb on - strand, within SO0899 at 927.106 kb on - strand, within SO0899 at 927.106 kb on - strand, within SO0899 at 927.107 kb on - strand, within SO0899 at 927.120 kb on - strand, within SO0899 at 927.126 kb on - strand, within SO0899 at 927.137 kb on + strand, within SO0899 at 927.255 kb on + strand at 927.276 kb on - strand at 927.312 kb on + strand at 927.325 kb on + strand at 927.435 kb on + strand at 927.440 kb on + strand at 927.443 kb on - strand at 927.443 kb on - strand at 927.507 kb on + strand at 927.507 kb on + strand at 927.507 kb on + strand at 927.507 kb on + strand at 927.507 kb on + strand at 927.515 kb on - strand at 927.515 kb on - strand at 927.515 kb on - strand at 927.515 kb on - strand at 927.515 kb on - strand at 927.546 kb on - strand, within SO0900 at 927.562 kb on - strand, within SO0900 at 927.622 kb on - strand, within SO0900 at 927.629 kb on - strand, within SO0900 at 927.642 kb on - strand, within SO0900 at 927.647 kb on - strand, within SO0900 at 927.686 kb on - strand, within SO0900 at 927.708 kb on + strand, within SO0900 at 927.715 kb on - strand, within SO0900 at 927.769 kb on + strand, within SO0900 at 927.769 kb on + strand, within SO0900 at 927.769 kb on + strand, within SO0900 at 927.769 kb on + strand, within SO0900 at 927.769 kb on + strand, within SO0900 at 927.777 kb on - strand, within SO0900 at 927.777 kb on - strand, within SO0900 at 927.777 kb on - strand, within SO0900 at 927.777 kb on - strand, within SO0900 at 927.792 kb on + strand, within SO0900 at 927.831 kb on + strand, within SO0900 at 927.839 kb on - strand, within SO0900 at 927.925 kb on + strand, within SO0900 at 927.999 kb on - strand, within SO0900 at 928.038 kb on - strand, within SO0900 at 928.154 kb on - strand, within SO0900 at 928.156 kb on + strand, within SO0900 at 928.316 kb on + strand, within SO0900 at 928.316 kb on + strand, within SO0900 at 928.316 kb on + strand, within SO0900 at 928.324 kb on - strand, within SO0900 at 928.324 kb on - strand, within SO0900 at 928.324 kb on - strand, within SO0900 at 928.331 kb on + strand, within SO0900 at 928.382 kb on - strand at 928.505 kb on - strand at 928.537 kb on + strand at 928.647 kb on + strand at 928.994 kb on + strand at 928.994 kb on + strand at 928.994 kb on + strand at 928.994 kb on + strand at 929.002 kb on - strand at 929.002 kb on - strand at 929.002 kb on - strand at 929.053 kb on + strand at 929.082 kb on + strand, within nqrA-1 at 929.216 kb on - strand, within nqrA-1 at 929.251 kb on + strand, within nqrA-1 at 929.318 kb on - strand, within nqrA-1 at 929.324 kb on + strand, within nqrA-1 at 929.331 kb on + strand, within nqrA-1 at 929.336 kb on + strand, within nqrA-1 at 929.339 kb on - strand, within nqrA-1 at 929.339 kb on - strand, within nqrA-1 at 929.458 kb on + strand, within nqrA-1 at 929.466 kb on - strand, within nqrA-1
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 926,443 + SO0898 0.31 -0.1 926,526 + SO0898 0.47 -0.6 926,534 - SO0898 0.48 -0.0 926,578 - SO0898 0.56 -0.0 926,581 + SO0898 0.57 +1.1 926,637 + SO0898 0.68 +0.0 926,645 - SO0898 0.69 -0.4 926,701 - SO0898 0.80 -0.5 926,775 + -0.2 926,905 - -1.7 927,093 + SO0899 0.54 +0.0 927,098 + SO0899 0.55 -0.1 927,098 + SO0899 0.55 +0.3 927,106 - SO0899 0.57 +0.0 927,106 - SO0899 0.57 -0.1 927,106 - SO0899 0.57 -0.4 927,107 - SO0899 0.57 -0.8 927,120 - SO0899 0.60 -0.1 927,126 - SO0899 0.61 -0.1 927,137 + SO0899 0.64 -0.9 927,255 + +0.8 927,276 - +0.3 927,312 + -0.3 927,325 + -0.4 927,435 + -0.3 927,440 + +0.5 927,443 - +0.0 927,443 - -0.1 927,507 + -0.2 927,507 + -0.2 927,507 + -0.6 927,507 + -0.6 927,507 + -1.0 927,515 - -0.5 927,515 - +0.0 927,515 - -1.4 927,515 - -0.2 927,515 - +0.0 927,546 - SO0900 0.11 -0.9 927,562 - SO0900 0.12 -0.2 927,622 - SO0900 0.18 +0.1 927,629 - SO0900 0.19 +0.0 927,642 - SO0900 0.20 -0.1 927,647 - SO0900 0.20 +0.2 927,686 - SO0900 0.24 -0.5 927,708 + SO0900 0.26 -0.3 927,715 - SO0900 0.27 -0.4 927,769 + SO0900 0.32 +0.1 927,769 + SO0900 0.32 -0.7 927,769 + SO0900 0.32 -0.1 927,769 + SO0900 0.32 +0.1 927,769 + SO0900 0.32 -0.1 927,777 - SO0900 0.33 -1.3 927,777 - SO0900 0.33 -1.7 927,777 - SO0900 0.33 -0.2 927,777 - SO0900 0.33 -0.9 927,792 + SO0900 0.34 +1.0 927,831 + SO0900 0.38 -0.3 927,839 - SO0900 0.39 +0.5 927,925 + SO0900 0.47 -0.3 927,999 - SO0900 0.54 -0.4 928,038 - SO0900 0.58 -0.6 928,154 - SO0900 0.69 -0.7 928,156 + SO0900 0.69 -1.2 928,316 + SO0900 0.85 +0.5 928,316 + SO0900 0.85 +0.2 928,316 + SO0900 0.85 -0.3 928,324 - SO0900 0.85 -0.8 928,324 - SO0900 0.85 -0.6 928,324 - SO0900 0.85 +0.1 928,331 + SO0900 0.86 -0.7 928,382 - -0.6 928,505 - -0.2 928,537 + -0.7 928,647 + +0.2 928,994 + -0.6 928,994 + -0.1 928,994 + +0.6 928,994 + -0.6 929,002 - -0.1 929,002 - -0.2 929,002 - -0.3 929,053 + -0.1 929,082 + nqrA-1 SO0902 0.11 +0.3 929,216 - nqrA-1 SO0902 0.21 -0.4 929,251 + nqrA-1 SO0902 0.23 -0.2 929,318 - nqrA-1 SO0902 0.28 +0.2 929,324 + nqrA-1 SO0902 0.29 +1.2 929,331 + nqrA-1 SO0902 0.29 +0.1 929,336 + nqrA-1 SO0902 0.30 +0.1 929,339 - nqrA-1 SO0902 0.30 +0.0 929,339 - nqrA-1 SO0902 0.30 -0.2 929,458 + nqrA-1 SO0902 0.39 -1.0 929,466 - nqrA-1 SO0902 0.39 +0.3
Or see this region's nucleotide sequence