Experiment: m.b. Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_550 and HP15_551 overlap by 1 nucleotides HP15_551 and HP15_553 are separated by 24 nucleotides HP15_553 and HP15_552 are separated by 0 nucleotides HP15_552 and HP15_554 are separated by 135 nucleotides
HP15_550: HP15_550 - phosphoheptose isomerase, at 570,444 to 571,046
_550
HP15_551: HP15_551 - hypothetical protein, at 571,046 to 571,411
_551
HP15_553: HP15_553 - LppC family lipoprotein, at 571,436 to 573,097
_553
HP15_552: HP15_552 - hypothetical protein, at 573,098 to 573,304
_552
HP15_554: HP15_554 - tetrapyrrole methylase family protein, at 573,440 to 574,336
_554
Position (kb) 571
572
573
574 Strain fitness (log2 ratio) -1
0
1 at 570.490 kb on - strand at 570.508 kb on + strand, within HP15_550 at 570.508 kb on + strand, within HP15_550 at 570.516 kb on - strand, within HP15_550 at 570.701 kb on - strand, within HP15_550 at 570.725 kb on - strand, within HP15_550 at 570.806 kb on + strand, within HP15_550 at 571.123 kb on - strand, within HP15_551 at 571.262 kb on + strand, within HP15_551 at 571.338 kb on - strand, within HP15_551 at 571.358 kb on + strand, within HP15_551 at 571.376 kb on - strand at 571.470 kb on + strand at 571.478 kb on - strand at 571.510 kb on + strand at 573.394 kb on + strand at 573.416 kb on - strand at 573.430 kb on + strand at 573.438 kb on - strand at 573.544 kb on + strand, within HP15_554 at 573.557 kb on + strand, within HP15_554 at 573.662 kb on - strand, within HP15_554 at 573.694 kb on - strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.703 kb on + strand, within HP15_554 at 573.711 kb on - strand, within HP15_554 at 573.711 kb on - strand, within HP15_554 at 573.711 kb on - strand, within HP15_554 at 573.787 kb on + strand, within HP15_554 at 573.792 kb on + strand, within HP15_554 at 573.801 kb on + strand, within HP15_554 at 573.828 kb on + strand, within HP15_554 at 573.834 kb on - strand, within HP15_554 at 573.838 kb on + strand, within HP15_554 at 573.935 kb on - strand, within HP15_554 at 574.016 kb on - strand, within HP15_554 at 574.048 kb on - strand, within HP15_554 at 574.082 kb on - strand, within HP15_554
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.5 mg/ml remove 570,490 - -0.8 570,508 + HP15_550 0.11 +0.1 570,508 + HP15_550 0.11 -1.4 570,516 - HP15_550 0.12 -0.9 570,701 - HP15_550 0.43 -0.9 570,725 - HP15_550 0.47 -1.1 570,806 + HP15_550 0.60 -1.1 571,123 - HP15_551 0.21 -0.7 571,262 + HP15_551 0.59 +0.3 571,338 - HP15_551 0.80 +0.1 571,358 + HP15_551 0.85 +0.2 571,376 - -0.1 571,470 + +0.9 571,478 - +0.8 571,510 + +0.2 573,394 + +0.6 573,416 - +0.3 573,430 + -1.4 573,438 - -0.3 573,544 + HP15_554 0.12 -0.5 573,557 + HP15_554 0.13 +0.1 573,662 - HP15_554 0.25 -0.5 573,694 - HP15_554 0.28 -0.6 573,703 + HP15_554 0.29 +0.2 573,703 + HP15_554 0.29 -0.1 573,703 + HP15_554 0.29 +0.1 573,703 + HP15_554 0.29 -1.1 573,711 - HP15_554 0.30 -0.2 573,711 - HP15_554 0.30 -0.5 573,711 - HP15_554 0.30 -0.3 573,787 + HP15_554 0.39 -0.7 573,792 + HP15_554 0.39 +0.1 573,801 + HP15_554 0.40 -0.8 573,828 + HP15_554 0.43 -0.7 573,834 - HP15_554 0.44 +0.6 573,838 + HP15_554 0.44 -0.4 573,935 - HP15_554 0.55 -0.3 574,016 - HP15_554 0.64 -0.2 574,048 - HP15_554 0.68 -0.9 574,082 - HP15_554 0.72 +0.1
Or see this region's nucleotide sequence