Experiment: m.b. Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_495 and HP15_496 are separated by 3 nucleotides HP15_496 and HP15_497 overlap by 4 nucleotides HP15_497 and HP15_498 are separated by 17 nucleotides HP15_498 and HP15_499 are separated by 138 nucleotides HP15_499 and HP15_500 are separated by 110 nucleotides
HP15_495: HP15_495 - transcription antitermination protein NusB, at 509,918 to 510,394
_495
HP15_496: HP15_496 - thiamine-monophosphate kinase, at 510,398 to 511,354
_496
HP15_497: HP15_497 - phosphatidylglycerophosphatase A, at 511,351 to 511,878
_497
HP15_498: HP15_498 - thiolase-like protein, at 511,896 to 512,099
_498
HP15_499: HP15_499 - hypothetical protein, at 512,238 to 512,348
_499
HP15_500: HP15_500 - conserved hypothetical protein, at 512,459 to 513,064
_500
Position (kb) 511
512 Strain fitness (log2 ratio) -1
0
1
2 at 511.998 kb on - strand, within HP15_498 at 512.000 kb on - strand, within HP15_498 at 512.000 kb on - strand, within HP15_498 at 512.028 kb on + strand, within HP15_498 at 512.113 kb on - strand at 512.376 kb on + strand at 512.455 kb on - strand at 512.551 kb on + strand, within HP15_500 at 512.551 kb on - strand, within HP15_500 at 512.635 kb on - strand, within HP15_500 at 512.785 kb on - strand, within HP15_500
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.5 mg/ml remove 511,998 - HP15_498 0.50 -0.5 512,000 - HP15_498 0.51 +1.7 512,000 - HP15_498 0.51 +0.5 512,028 + HP15_498 0.65 +1.8 512,113 - -0.7 512,376 + +0.3 512,455 - +0.1 512,551 + HP15_500 0.15 +1.2 512,551 - HP15_500 0.15 +0.3 512,635 - HP15_500 0.29 -0.0 512,785 - HP15_500 0.54 +0.2
Or see this region's nucleotide sequence