Experiment: m.b. Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4167 and HP15_4168 are separated by 598 nucleotides HP15_4168 and HP15_4169 are separated by 575 nucleotides
HP15_4167: HP15_4167 - conserved hypothetical protein, at 4,404,083 to 4,404,550
_4167
HP15_4168: HP15_4168 - hypothetical protein, at 4,405,149 to 4,405,256
_4168
HP15_4169: HP15_4169 - diguanylate cyclase (GGDEF domain), at 4,405,832 to 4,406,788
_4169
Position (kb)
4405
4406 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4404.175 kb on - strand, within HP15_4167 at 4404.311 kb on + strand, within HP15_4167 at 4404.325 kb on + strand, within HP15_4167 at 4404.333 kb on - strand, within HP15_4167 at 4404.333 kb on - strand, within HP15_4167 at 4404.334 kb on + strand, within HP15_4167 at 4404.349 kb on - strand, within HP15_4167 at 4404.375 kb on - strand, within HP15_4167 at 4404.474 kb on - strand, within HP15_4167 at 4404.481 kb on + strand, within HP15_4167 at 4404.669 kb on + strand at 4404.669 kb on + strand at 4404.686 kb on + strand at 4404.686 kb on + strand at 4404.691 kb on + strand at 4404.767 kb on + strand at 4404.767 kb on + strand at 4404.770 kb on - strand at 4404.816 kb on - strand at 4404.905 kb on + strand at 4404.976 kb on + strand at 4405.136 kb on - strand at 4405.138 kb on + strand at 4405.191 kb on - strand, within HP15_4168 at 4405.195 kb on + strand, within HP15_4168 at 4405.203 kb on - strand, within HP15_4168 at 4405.207 kb on + strand, within HP15_4168 at 4405.287 kb on + strand at 4405.287 kb on + strand at 4405.287 kb on + strand at 4405.295 kb on - strand at 4405.295 kb on - strand at 4405.295 kb on - strand at 4405.314 kb on + strand at 4405.427 kb on + strand at 4405.435 kb on - strand at 4405.445 kb on - strand at 4405.456 kb on - strand at 4405.462 kb on + strand at 4405.492 kb on + strand at 4405.559 kb on + strand at 4405.612 kb on - strand at 4405.647 kb on - strand at 4405.706 kb on + strand at 4405.791 kb on - strand at 4405.829 kb on + strand at 4405.854 kb on + strand at 4405.862 kb on - strand at 4405.862 kb on - strand at 4406.027 kb on + strand, within HP15_4169 at 4406.035 kb on - strand, within HP15_4169 at 4406.074 kb on - strand, within HP15_4169 at 4406.144 kb on + strand, within HP15_4169 at 4406.144 kb on + strand, within HP15_4169 at 4406.191 kb on + strand, within HP15_4169 at 4406.210 kb on + strand, within HP15_4169 at 4406.218 kb on - strand, within HP15_4169 at 4406.248 kb on + strand, within HP15_4169 at 4406.256 kb on - strand, within HP15_4169 at 4406.256 kb on - strand, within HP15_4169
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.5 mg/ml remove 4,404,175 - HP15_4167 0.20 +0.4 4,404,311 + HP15_4167 0.49 -2.6 4,404,325 + HP15_4167 0.52 -0.4 4,404,333 - HP15_4167 0.53 -0.1 4,404,333 - HP15_4167 0.53 -0.5 4,404,334 + HP15_4167 0.54 +0.4 4,404,349 - HP15_4167 0.57 -0.1 4,404,375 - HP15_4167 0.62 +0.0 4,404,474 - HP15_4167 0.84 +0.3 4,404,481 + HP15_4167 0.85 -0.4 4,404,669 + +1.3 4,404,669 + -0.3 4,404,686 + +1.0 4,404,686 + -0.3 4,404,691 + -0.3 4,404,767 + +0.0 4,404,767 + -0.4 4,404,770 - -0.2 4,404,816 - -0.5 4,404,905 + +0.7 4,404,976 + +0.3 4,405,136 - -0.3 4,405,138 + +0.6 4,405,191 - HP15_4168 0.39 -0.0 4,405,195 + HP15_4168 0.43 +0.1 4,405,203 - HP15_4168 0.50 +0.9 4,405,207 + HP15_4168 0.54 +1.9 4,405,287 + -0.3 4,405,287 + -0.4 4,405,287 + -0.1 4,405,295 - -0.3 4,405,295 - -0.7 4,405,295 - +0.7 4,405,314 + -0.0 4,405,427 + -0.3 4,405,435 - +1.1 4,405,445 - +0.9 4,405,456 - -0.4 4,405,462 + +0.6 4,405,492 + -0.1 4,405,559 + -0.5 4,405,612 - +0.9 4,405,647 - -0.0 4,405,706 + +0.6 4,405,791 - -1.0 4,405,829 + +0.4 4,405,854 + -0.1 4,405,862 - +0.6 4,405,862 - +0.8 4,406,027 + HP15_4169 0.20 -0.0 4,406,035 - HP15_4169 0.21 +0.6 4,406,074 - HP15_4169 0.25 -2.0 4,406,144 + HP15_4169 0.33 +1.3 4,406,144 + HP15_4169 0.33 -0.1 4,406,191 + HP15_4169 0.38 -1.8 4,406,210 + HP15_4169 0.39 +0.3 4,406,218 - HP15_4169 0.40 -0.1 4,406,248 + HP15_4169 0.43 +0.0 4,406,256 - HP15_4169 0.44 +0.1 4,406,256 - HP15_4169 0.44 +0.5
Or see this region's nucleotide sequence