Experiment: m.b. Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_318 and HP15_319 are separated by 3 nucleotides HP15_319 and HP15_320 are separated by 95 nucleotides HP15_320 and HP15_321 overlap by 4 nucleotides
HP15_318: HP15_318 - metalloendopeptidase, glycoprotease family, at 315,665 to 316,720
_318
HP15_319: HP15_319 - predicted membrane protein, at 316,724 to 317,314
_319
HP15_320: HP15_320 - dihydroneopterin aldolase, at 317,410 to 317,811
_320
HP15_321: HP15_321 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 317,808 to 318,335
_321
Position (kb) 316
317
318 Strain fitness (log2 ratio) -1
0
1 at 316.818 kb on - strand, within HP15_319 at 316.959 kb on - strand, within HP15_319 at 316.962 kb on + strand, within HP15_319 at 317.041 kb on + strand, within HP15_319 at 317.122 kb on + strand, within HP15_319 at 317.194 kb on - strand, within HP15_319 at 317.248 kb on + strand, within HP15_319 at 317.390 kb on + strand at 317.803 kb on + strand at 317.878 kb on - strand, within HP15_321 at 317.928 kb on + strand, within HP15_321 at 318.116 kb on - strand, within HP15_321 at 318.278 kb on + strand, within HP15_321 at 318.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.5 mg/ml remove 316,818 - HP15_319 0.16 -0.2 316,959 - HP15_319 0.40 +0.0 316,962 + HP15_319 0.40 -0.5 317,041 + HP15_319 0.54 +0.0 317,122 + HP15_319 0.67 -0.7 317,194 - HP15_319 0.80 -0.1 317,248 + HP15_319 0.89 -0.0 317,390 + +0.6 317,803 + +0.3 317,878 - HP15_321 0.13 -0.4 317,928 + HP15_321 0.23 -0.3 318,116 - HP15_321 0.58 -0.4 318,278 + HP15_321 0.89 -0.5 318,291 + +1.2
Or see this region's nucleotide sequence