Experiment: m.b. Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2762 and HP15_2763 are separated by 104 nucleotides HP15_2763 and HP15_2764 are separated by 112 nucleotides HP15_2764 and HP15_2765 are separated by 13 nucleotides HP15_2765 and HP15_2766 are separated by 16 nucleotides
HP15_2762: HP15_2762 - transcriptional regulator, LysR family protein, at 2,916,108 to 2,917,010
_2762
HP15_2763: HP15_2763 - methyltransferase, UbiE/COQ5 family protein, at 2,917,115 to 2,917,747
_2763
HP15_2764: HP15_2764 - membrane protein, at 2,917,860 to 2,918,063
_2764
HP15_2765: HP15_2765 - conserved hypothetical protein, membrane, at 2,918,077 to 2,918,469
_2765
HP15_2766: HP15_2766 - sensory box/GGDEF family protein, at 2,918,486 to 2,919,520
_2766
Position (kb)
2917
2918
2919 Strain fitness (log2 ratio)
-2
-1
0
1 at 2917.186 kb on - strand, within HP15_2763 at 2917.408 kb on - strand, within HP15_2763 at 2917.455 kb on + strand, within HP15_2763 at 2917.574 kb on - strand, within HP15_2763 at 2917.596 kb on - strand, within HP15_2763 at 2917.657 kb on - strand, within HP15_2763 at 2917.657 kb on - strand, within HP15_2763 at 2917.751 kb on + strand at 2917.803 kb on - strand at 2917.837 kb on + strand at 2917.867 kb on + strand at 2917.875 kb on - strand at 2917.875 kb on - strand at 2917.913 kb on + strand, within HP15_2764 at 2917.986 kb on + strand, within HP15_2764 at 2917.986 kb on + strand, within HP15_2764 at 2917.986 kb on + strand, within HP15_2764 at 2918.066 kb on - strand at 2918.095 kb on - strand at 2918.102 kb on - strand at 2918.155 kb on + strand, within HP15_2765 at 2918.163 kb on - strand, within HP15_2765 at 2918.165 kb on + strand, within HP15_2765 at 2918.165 kb on + strand, within HP15_2765 at 2918.173 kb on - strand, within HP15_2765 at 2918.196 kb on + strand, within HP15_2765 at 2918.199 kb on - strand, within HP15_2765 at 2918.209 kb on - strand, within HP15_2765 at 2918.295 kb on + strand, within HP15_2765 at 2918.427 kb on - strand, within HP15_2765 at 2918.482 kb on - strand at 2918.536 kb on - strand at 2918.631 kb on + strand, within HP15_2766 at 2918.727 kb on + strand, within HP15_2766 at 2918.896 kb on + strand, within HP15_2766 at 2919.042 kb on - strand, within HP15_2766
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.5 mg/ml remove 2,917,186 - HP15_2763 0.11 -0.3 2,917,408 - HP15_2763 0.46 -0.4 2,917,455 + HP15_2763 0.54 -0.3 2,917,574 - HP15_2763 0.73 -0.1 2,917,596 - HP15_2763 0.76 +0.5 2,917,657 - HP15_2763 0.86 -0.1 2,917,657 - HP15_2763 0.86 -0.8 2,917,751 + +0.3 2,917,803 - +0.8 2,917,837 + -0.5 2,917,867 + +0.5 2,917,875 - -0.0 2,917,875 - +0.4 2,917,913 + HP15_2764 0.26 +0.5 2,917,986 + HP15_2764 0.62 +0.1 2,917,986 + HP15_2764 0.62 +0.2 2,917,986 + HP15_2764 0.62 +1.0 2,918,066 - +0.6 2,918,095 - +0.1 2,918,102 - -0.1 2,918,155 + HP15_2765 0.20 +0.5 2,918,163 - HP15_2765 0.22 +0.1 2,918,165 + HP15_2765 0.22 +0.6 2,918,165 + HP15_2765 0.22 +0.2 2,918,173 - HP15_2765 0.24 +0.5 2,918,196 + HP15_2765 0.30 +0.2 2,918,199 - HP15_2765 0.31 +0.7 2,918,209 - HP15_2765 0.34 -2.2 2,918,295 + HP15_2765 0.55 -0.3 2,918,427 - HP15_2765 0.89 +0.3 2,918,482 - +0.1 2,918,536 - -0.4 2,918,631 + HP15_2766 0.14 +0.4 2,918,727 + HP15_2766 0.23 +0.8 2,918,896 + HP15_2766 0.40 -0.5 2,919,042 - HP15_2766 0.54 +0.5
Or see this region's nucleotide sequence