Experiment: m.b. Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2554 and HP15_2555 are separated by 66 nucleotides HP15_2555 and HP15_2556 are separated by 38 nucleotides HP15_2556 and HP15_2557 are separated by 94 nucleotides HP15_2557 and HP15_2558 overlap by 23 nucleotides
HP15_2554: HP15_2554 - D-3-phosphoglycerate dehydrogenase-like protein, at 2,700,691 to 2,701,920
_2554
HP15_2555: HP15_2555 - OmpA/MotB domain protein, at 2,701,987 to 2,702,643
_2555
HP15_2556: HP15_2556 - lysophospholipase, at 2,702,682 to 2,703,689
_2556
HP15_2557: HP15_2557 - alpha/beta hydrolase fold-3 domain protein, at 2,703,784 to 2,704,677
_2557
HP15_2558: HP15_2558 - putative nuclease, at 2,704,655 to 2,704,909
_2558
Position (kb)
2702
2703
2704 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2702.058 kb on + strand, within HP15_2555 at 2702.103 kb on + strand, within HP15_2555 at 2702.200 kb on - strand, within HP15_2555 at 2702.224 kb on + strand, within HP15_2555 at 2702.269 kb on - strand, within HP15_2555 at 2702.450 kb on + strand, within HP15_2555 at 2702.570 kb on + strand, within HP15_2555 at 2702.577 kb on - strand, within HP15_2555 at 2702.578 kb on - strand at 2702.601 kb on + strand at 2702.653 kb on - strand at 2702.862 kb on - strand, within HP15_2556 at 2702.862 kb on - strand, within HP15_2556 at 2702.871 kb on - strand, within HP15_2556 at 2702.908 kb on + strand, within HP15_2556 at 2702.921 kb on - strand, within HP15_2556 at 2702.962 kb on + strand, within HP15_2556 at 2703.018 kb on + strand, within HP15_2556 at 2703.024 kb on - strand, within HP15_2556 at 2703.035 kb on + strand, within HP15_2556 at 2703.075 kb on - strand, within HP15_2556 at 2703.207 kb on + strand, within HP15_2556 at 2703.215 kb on - strand, within HP15_2556 at 2703.241 kb on + strand, within HP15_2556 at 2703.331 kb on - strand, within HP15_2556 at 2703.434 kb on - strand, within HP15_2556 at 2703.444 kb on - strand, within HP15_2556 at 2703.454 kb on - strand, within HP15_2556 at 2703.454 kb on - strand, within HP15_2556 at 2703.499 kb on + strand, within HP15_2556 at 2703.513 kb on - strand, within HP15_2556 at 2703.620 kb on - strand at 2703.630 kb on + strand at 2703.633 kb on - strand at 2703.638 kb on - strand at 2703.703 kb on - strand at 2703.732 kb on + strand at 2703.738 kb on + strand at 2703.760 kb on + strand at 2703.778 kb on + strand at 2703.804 kb on - strand at 2703.834 kb on + strand at 2703.847 kb on - strand at 2703.905 kb on + strand, within HP15_2557 at 2703.913 kb on + strand, within HP15_2557 at 2703.923 kb on - strand, within HP15_2557 at 2704.021 kb on + strand, within HP15_2557 at 2704.050 kb on - strand, within HP15_2557 at 2704.313 kb on + strand, within HP15_2557 at 2704.313 kb on + strand, within HP15_2557 at 2704.313 kb on + strand, within HP15_2557 at 2704.321 kb on - strand, within HP15_2557 at 2704.321 kb on - strand, within HP15_2557 at 2704.462 kb on + strand, within HP15_2557 at 2704.472 kb on + strand, within HP15_2557 at 2704.484 kb on - strand, within HP15_2557 at 2704.560 kb on + strand, within HP15_2557 at 2704.567 kb on + strand, within HP15_2557
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.5 mg/ml remove 2,702,058 + HP15_2555 0.11 -0.8 2,702,103 + HP15_2555 0.18 -0.7 2,702,200 - HP15_2555 0.32 -0.9 2,702,224 + HP15_2555 0.36 -1.2 2,702,269 - HP15_2555 0.43 -0.8 2,702,450 + HP15_2555 0.70 -0.6 2,702,570 + HP15_2555 0.89 +0.4 2,702,577 - HP15_2555 0.90 -1.7 2,702,578 - -0.9 2,702,601 + -0.3 2,702,653 - +2.2 2,702,862 - HP15_2556 0.18 +2.4 2,702,862 - HP15_2556 0.18 +1.8 2,702,871 - HP15_2556 0.19 +2.1 2,702,908 + HP15_2556 0.22 +2.4 2,702,921 - HP15_2556 0.24 +2.3 2,702,962 + HP15_2556 0.28 +1.6 2,703,018 + HP15_2556 0.33 +2.6 2,703,024 - HP15_2556 0.34 +2.8 2,703,035 + HP15_2556 0.35 +2.3 2,703,075 - HP15_2556 0.39 +3.6 2,703,207 + HP15_2556 0.52 +2.2 2,703,215 - HP15_2556 0.53 +2.4 2,703,241 + HP15_2556 0.55 +2.0 2,703,331 - HP15_2556 0.64 +3.1 2,703,434 - HP15_2556 0.75 +2.6 2,703,444 - HP15_2556 0.76 +1.9 2,703,454 - HP15_2556 0.77 +2.4 2,703,454 - HP15_2556 0.77 +2.5 2,703,499 + HP15_2556 0.81 +1.9 2,703,513 - HP15_2556 0.82 +2.1 2,703,620 - +2.3 2,703,630 + +2.1 2,703,633 - +3.3 2,703,638 - +2.6 2,703,703 - +1.1 2,703,732 + +0.5 2,703,738 + +0.2 2,703,760 + -0.1 2,703,778 + -0.2 2,703,804 - -0.0 2,703,834 + +0.1 2,703,847 - +0.6 2,703,905 + HP15_2557 0.14 +1.0 2,703,913 + HP15_2557 0.14 +0.3 2,703,923 - HP15_2557 0.16 -1.0 2,704,021 + HP15_2557 0.27 +0.9 2,704,050 - HP15_2557 0.30 -0.1 2,704,313 + HP15_2557 0.59 -0.1 2,704,313 + HP15_2557 0.59 +0.3 2,704,313 + HP15_2557 0.59 +2.1 2,704,321 - HP15_2557 0.60 +0.9 2,704,321 - HP15_2557 0.60 +0.1 2,704,462 + HP15_2557 0.76 +1.5 2,704,472 + HP15_2557 0.77 +0.1 2,704,484 - HP15_2557 0.78 +1.0 2,704,560 + HP15_2557 0.87 -0.3 2,704,567 + HP15_2557 0.88 -0.4
Or see this region's nucleotide sequence