Strain Fitness in Marinobacter adhaerens HP15 around HP15_258

Experiment: m.b. Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_256 and HP15_257 are separated by 6 nucleotidesHP15_257 and HP15_258 are separated by 83 nucleotidesHP15_258 and HP15_259 overlap by 1 nucleotides HP15_256: HP15_256 - serine protease, at 245,359 to 247,575 _256 HP15_257: HP15_257 - transcriptional regulator, GntR family, at 247,582 to 248,259 _257 HP15_258: HP15_258 - phospholipase D/Transphosphatidylase, at 248,343 to 249,773 _258 HP15_259: HP15_259 - AraC-type DNA-binding domain-containing protein, at 249,773 to 250,849 _259 Position (kb) 248 249 250Strain fitness (log2 ratio) -1 0 1 2at 247.365 kb on + strandat 247.365 kb on + strandat 247.370 kb on + strandat 247.410 kb on - strandat 247.412 kb on + strandat 247.420 kb on - strandat 247.426 kb on + strandat 247.566 kb on + strandat 247.574 kb on - strandat 247.770 kb on - strand, within HP15_257at 247.787 kb on + strand, within HP15_257at 247.787 kb on + strand, within HP15_257at 247.787 kb on + strand, within HP15_257at 247.795 kb on - strand, within HP15_257at 247.795 kb on - strand, within HP15_257at 247.829 kb on + strand, within HP15_257at 247.842 kb on - strand, within HP15_257at 247.844 kb on + strand, within HP15_257at 247.844 kb on + strand, within HP15_257at 247.852 kb on - strand, within HP15_257at 247.862 kb on - strand, within HP15_257at 248.003 kb on + strand, within HP15_257at 248.054 kb on + strand, within HP15_257at 248.131 kb on - strand, within HP15_257at 248.164 kb on - strand, within HP15_257at 248.232 kb on + strandat 248.301 kb on - strandat 248.341 kb on + strandat 248.341 kb on + strandat 248.396 kb on - strandat 248.434 kb on + strandat 248.491 kb on - strand, within HP15_258at 248.501 kb on - strand, within HP15_258at 248.501 kb on - strand, within HP15_258at 248.548 kb on + strand, within HP15_258at 248.603 kb on - strand, within HP15_258at 248.650 kb on + strand, within HP15_258at 248.650 kb on + strand, within HP15_258at 248.658 kb on - strand, within HP15_258at 248.658 kb on - strand, within HP15_258at 248.658 kb on - strand, within HP15_258at 248.738 kb on + strand, within HP15_258at 248.763 kb on + strand, within HP15_258at 248.781 kb on - strand, within HP15_258at 248.796 kb on - strand, within HP15_258at 248.863 kb on + strand, within HP15_258at 248.957 kb on - strand, within HP15_258at 248.990 kb on - strand, within HP15_258at 249.018 kb on + strand, within HP15_258at 249.033 kb on + strand, within HP15_258at 249.033 kb on + strand, within HP15_258at 249.045 kb on + strand, within HP15_258at 249.065 kb on + strand, within HP15_258at 249.268 kb on + strand, within HP15_258at 249.276 kb on - strand, within HP15_258at 249.276 kb on - strand, within HP15_258at 249.286 kb on - strand, within HP15_258at 249.341 kb on - strand, within HP15_258at 249.374 kb on - strand, within HP15_258at 249.381 kb on - strand, within HP15_258at 249.539 kb on + strand, within HP15_258at 249.634 kb on - strandat 249.639 kb on - strandat 249.645 kb on + strandat 249.734 kb on - strandat 249.744 kb on - strandat 249.808 kb on + strandat 249.860 kb on - strandat 249.885 kb on + strand, within HP15_259at 249.885 kb on + strand, within HP15_259at 249.946 kb on + strand, within HP15_259at 249.954 kb on - strand, within HP15_259at 250.006 kb on - strand, within HP15_259at 250.033 kb on - strand, within HP15_259at 250.052 kb on - strand, within HP15_259at 250.057 kb on + strand, within HP15_259at 250.161 kb on + strand, within HP15_259at 250.190 kb on - strand, within HP15_259at 250.397 kb on + strand, within HP15_259at 250.405 kb on - strand, within HP15_259at 250.528 kb on + strand, within HP15_259at 250.554 kb on - strand, within HP15_259

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.5 mg/ml
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247,365 + +0.2
247,365 + -1.0
247,370 + -0.0
247,410 - +0.0
247,412 + -0.1
247,420 - +0.0
247,426 + -0.7
247,566 + +0.0
247,574 - +0.5
247,770 - HP15_257 0.28 -0.0
247,787 + HP15_257 0.30 +0.1
247,787 + HP15_257 0.30 -0.8
247,787 + HP15_257 0.30 -0.3
247,795 - HP15_257 0.31 -0.5
247,795 - HP15_257 0.31 +0.9
247,829 + HP15_257 0.36 +1.9
247,842 - HP15_257 0.38 -0.2
247,844 + HP15_257 0.39 -0.1
247,844 + HP15_257 0.39 +0.4
247,852 - HP15_257 0.40 -1.1
247,862 - HP15_257 0.41 -0.4
248,003 + HP15_257 0.62 -0.1
248,054 + HP15_257 0.70 +1.0
248,131 - HP15_257 0.81 +1.0
248,164 - HP15_257 0.86 -0.1
248,232 + +0.2
248,301 - +0.0
248,341 + +1.2
248,341 + +0.1
248,396 - -0.4
248,434 + -1.1
248,491 - HP15_258 0.10 +0.1
248,501 - HP15_258 0.11 -1.1
248,501 - HP15_258 0.11 +0.7
248,548 + HP15_258 0.14 -0.2
248,603 - HP15_258 0.18 +0.4
248,650 + HP15_258 0.21 -0.2
248,650 + HP15_258 0.21 -0.4
248,658 - HP15_258 0.22 -0.5
248,658 - HP15_258 0.22 -1.1
248,658 - HP15_258 0.22 -1.4
248,738 + HP15_258 0.28 +0.1
248,763 + HP15_258 0.29 +0.1
248,781 - HP15_258 0.31 -0.2
248,796 - HP15_258 0.32 -0.8
248,863 + HP15_258 0.36 -0.0
248,957 - HP15_258 0.43 +1.0
248,990 - HP15_258 0.45 -0.9
249,018 + HP15_258 0.47 -0.2
249,033 + HP15_258 0.48 -0.3
249,033 + HP15_258 0.48 -1.6
249,045 + HP15_258 0.49 +0.3
249,065 + HP15_258 0.50 -0.7
249,268 + HP15_258 0.65 -0.1
249,276 - HP15_258 0.65 +0.9
249,276 - HP15_258 0.65 +0.1
249,286 - HP15_258 0.66 +0.0
249,341 - HP15_258 0.70 -0.2
249,374 - HP15_258 0.72 +0.9
249,381 - HP15_258 0.73 +0.3
249,539 + HP15_258 0.84 -0.0
249,634 - +0.5
249,639 - +0.7
249,645 + +1.0
249,734 - -0.5
249,744 - -0.3
249,808 + +0.3
249,860 - -0.2
249,885 + HP15_259 0.10 -0.7
249,885 + HP15_259 0.10 +0.4
249,946 + HP15_259 0.16 -0.4
249,954 - HP15_259 0.17 +0.6
250,006 - HP15_259 0.22 +0.3
250,033 - HP15_259 0.24 +0.9
250,052 - HP15_259 0.26 -0.4
250,057 + HP15_259 0.26 -0.1
250,161 + HP15_259 0.36 +0.0
250,190 - HP15_259 0.39 +0.4
250,397 + HP15_259 0.58 +0.3
250,405 - HP15_259 0.59 +0.7
250,528 + HP15_259 0.70 +0.6
250,554 - HP15_259 0.73 -0.3

Or see this region's nucleotide sequence