Experiment: m.b. Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_238 and HP15_239 are separated by 8 nucleotides HP15_239 and HP15_240 overlap by 20 nucleotides HP15_240 and HP15_241 are separated by 92 nucleotides HP15_241 and HP15_242 are separated by 29 nucleotides
HP15_238: HP15_238 - protein of unknown function, HemX, at 223,545 to 224,669
_238
HP15_239: HP15_239 - uroporphyrinogen-III synthase, at 224,678 to 225,487
_239
HP15_240: HP15_240 - porphobilinogen deaminase, at 225,468 to 226,409
_240
HP15_241: HP15_241 - alginate biosynthesis regulatory protein AlgR-like protein, at 226,502 to 227,251
_241
HP15_242: HP15_242 - histidine kinase internal region, at 227,281 to 228,321
_242
Position (kb) 225
226
227 Strain fitness (log2 ratio) -2
-1
0
1 at 224.523 kb on - strand, within HP15_238 at 226.527 kb on - strand at 226.605 kb on - strand, within HP15_241 at 226.630 kb on + strand, within HP15_241 at 226.655 kb on + strand, within HP15_241 at 226.665 kb on + strand, within HP15_241 at 226.673 kb on - strand, within HP15_241 at 226.673 kb on - strand, within HP15_241 at 226.673 kb on - strand, within HP15_241 at 226.775 kb on + strand, within HP15_241 at 226.814 kb on - strand, within HP15_241 at 226.849 kb on - strand, within HP15_241 at 226.849 kb on - strand, within HP15_241 at 226.890 kb on + strand, within HP15_241 at 226.902 kb on + strand, within HP15_241 at 226.909 kb on - strand, within HP15_241 at 226.935 kb on + strand, within HP15_241 at 226.945 kb on + strand, within HP15_241 at 227.247 kb on + strand at 227.271 kb on + strand at 227.271 kb on + strand at 227.362 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.5 mg/ml remove 224,523 - HP15_238 0.87 -2.0 226,527 - -0.6 226,605 - HP15_241 0.14 +0.5 226,630 + HP15_241 0.17 +0.4 226,655 + HP15_241 0.20 +0.3 226,665 + HP15_241 0.22 -0.4 226,673 - HP15_241 0.23 +0.9 226,673 - HP15_241 0.23 -0.1 226,673 - HP15_241 0.23 +0.2 226,775 + HP15_241 0.36 +1.2 226,814 - HP15_241 0.42 +0.0 226,849 - HP15_241 0.46 +0.2 226,849 - HP15_241 0.46 +0.7 226,890 + HP15_241 0.52 -0.4 226,902 + HP15_241 0.53 -1.4 226,909 - HP15_241 0.54 +0.2 226,935 + HP15_241 0.58 +0.5 226,945 + HP15_241 0.59 +0.3 227,247 + +0.1 227,271 + +0.2 227,271 + -0.2 227,362 + -0.7
Or see this region's nucleotide sequence