Strain Fitness in Marinobacter adhaerens HP15 around HP15_1945

Experiment: m.b. Vancomycin 0.5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1944 and HP15_1945 are separated by 102 nucleotidesHP15_1945 and HP15_1946 are separated by 146 nucleotides HP15_1944: HP15_1944 - conserved hypothetical protein, secreted, at 2,063,095 to 2,064,165 _1944 HP15_1945: HP15_1945 - conserved hypothetical protein, secreted, at 2,064,268 to 2,065,356 _1945 HP15_1946: HP15_1946 - membrane protein containing DUF6, transmembrane, at 2,065,503 to 2,066,453 _1946 Position (kb) 2064 2065 2066Strain fitness (log2 ratio) -2 -1 0 1 2at 2063.309 kb on + strand, within HP15_1944at 2063.358 kb on - strand, within HP15_1944at 2063.367 kb on + strand, within HP15_1944at 2063.389 kb on - strand, within HP15_1944at 2063.415 kb on + strand, within HP15_1944at 2063.525 kb on + strand, within HP15_1944at 2063.525 kb on + strand, within HP15_1944at 2063.525 kb on + strand, within HP15_1944at 2063.565 kb on - strand, within HP15_1944at 2063.598 kb on - strand, within HP15_1944at 2063.717 kb on + strand, within HP15_1944at 2063.768 kb on - strand, within HP15_1944at 2063.771 kb on + strand, within HP15_1944at 2063.789 kb on - strand, within HP15_1944at 2063.803 kb on + strand, within HP15_1944at 2063.839 kb on + strand, within HP15_1944at 2063.847 kb on - strand, within HP15_1944at 2063.850 kb on + strand, within HP15_1944at 2063.850 kb on + strand, within HP15_1944at 2063.953 kb on - strand, within HP15_1944at 2064.049 kb on + strand, within HP15_1944at 2064.063 kb on - strandat 2064.294 kb on + strandat 2064.354 kb on - strandat 2064.371 kb on + strandat 2064.456 kb on + strand, within HP15_1945at 2064.545 kb on + strand, within HP15_1945at 2064.545 kb on + strand, within HP15_1945at 2064.559 kb on + strand, within HP15_1945at 2064.577 kb on + strand, within HP15_1945at 2064.577 kb on + strand, within HP15_1945at 2064.744 kb on - strand, within HP15_1945at 2064.744 kb on - strand, within HP15_1945at 2064.746 kb on + strand, within HP15_1945at 2064.754 kb on - strand, within HP15_1945at 2064.758 kb on + strand, within HP15_1945at 2064.892 kb on - strand, within HP15_1945at 2064.971 kb on - strand, within HP15_1945at 2065.115 kb on + strand, within HP15_1945at 2065.123 kb on - strand, within HP15_1945at 2065.160 kb on + strand, within HP15_1945at 2065.160 kb on + strand, within HP15_1945at 2065.168 kb on - strand, within HP15_1945at 2065.304 kb on + strandat 2065.312 kb on - strandat 2065.374 kb on - strandat 2065.383 kb on + strandat 2065.396 kb on - strandat 2065.716 kb on + strand, within HP15_1946at 2065.734 kb on + strand, within HP15_1946at 2065.734 kb on + strand, within HP15_1946at 2065.734 kb on + strand, within HP15_1946at 2065.742 kb on - strand, within HP15_1946at 2065.742 kb on - strand, within HP15_1946at 2065.778 kb on + strand, within HP15_1946at 2065.791 kb on + strand, within HP15_1946at 2065.992 kb on + strand, within HP15_1946at 2066.062 kb on + strand, within HP15_1946at 2066.080 kb on - strand, within HP15_1946at 2066.101 kb on - strand, within HP15_1946at 2066.108 kb on + strand, within HP15_1946at 2066.151 kb on + strand, within HP15_1946at 2066.159 kb on - strand, within HP15_1946at 2066.177 kb on + strand, within HP15_1946at 2066.185 kb on - strand, within HP15_1946at 2066.185 kb on - strand, within HP15_1946at 2066.248 kb on + strand, within HP15_1946at 2066.250 kb on - strand, within HP15_1946at 2066.269 kb on - strand, within HP15_1946at 2066.302 kb on - strand, within HP15_1946at 2066.304 kb on + strand, within HP15_1946at 2066.307 kb on - strand, within HP15_1946at 2066.309 kb on + strand, within HP15_1946at 2066.317 kb on - strand, within HP15_1946

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.5 mg/ml
remove
2,063,309 + HP15_1944 0.20 +0.2
2,063,358 - HP15_1944 0.25 +0.9
2,063,367 + HP15_1944 0.25 -0.1
2,063,389 - HP15_1944 0.27 +0.7
2,063,415 + HP15_1944 0.30 -0.5
2,063,525 + HP15_1944 0.40 +0.3
2,063,525 + HP15_1944 0.40 -0.7
2,063,525 + HP15_1944 0.40 -0.6
2,063,565 - HP15_1944 0.44 +0.4
2,063,598 - HP15_1944 0.47 +0.6
2,063,717 + HP15_1944 0.58 +0.5
2,063,768 - HP15_1944 0.63 -0.1
2,063,771 + HP15_1944 0.63 -0.1
2,063,789 - HP15_1944 0.65 +0.8
2,063,803 + HP15_1944 0.66 -0.7
2,063,839 + HP15_1944 0.69 +0.7
2,063,847 - HP15_1944 0.70 -0.8
2,063,850 + HP15_1944 0.70 +0.2
2,063,850 + HP15_1944 0.70 +1.1
2,063,953 - HP15_1944 0.80 -0.1
2,064,049 + HP15_1944 0.89 +1.3
2,064,063 - -0.2
2,064,294 + -0.5
2,064,354 - -0.3
2,064,371 + +0.6
2,064,456 + HP15_1945 0.17 -0.8
2,064,545 + HP15_1945 0.25 -0.6
2,064,545 + HP15_1945 0.25 +0.5
2,064,559 + HP15_1945 0.27 -0.3
2,064,577 + HP15_1945 0.28 -1.0
2,064,577 + HP15_1945 0.28 -0.3
2,064,744 - HP15_1945 0.44 +1.5
2,064,744 - HP15_1945 0.44 +0.1
2,064,746 + HP15_1945 0.44 +0.1
2,064,754 - HP15_1945 0.45 -0.0
2,064,758 + HP15_1945 0.45 -0.7
2,064,892 - HP15_1945 0.57 +0.6
2,064,971 - HP15_1945 0.65 -0.1
2,065,115 + HP15_1945 0.78 +2.0
2,065,123 - HP15_1945 0.79 -0.1
2,065,160 + HP15_1945 0.82 -1.3
2,065,160 + HP15_1945 0.82 -1.4
2,065,168 - HP15_1945 0.83 -0.7
2,065,304 + -1.1
2,065,312 - -1.1
2,065,374 - -0.2
2,065,383 + -0.2
2,065,396 - +0.6
2,065,716 + HP15_1946 0.22 +0.6
2,065,734 + HP15_1946 0.24 +0.0
2,065,734 + HP15_1946 0.24 +0.3
2,065,734 + HP15_1946 0.24 -0.1
2,065,742 - HP15_1946 0.25 +0.9
2,065,742 - HP15_1946 0.25 +0.1
2,065,778 + HP15_1946 0.29 +0.8
2,065,791 + HP15_1946 0.30 -0.9
2,065,992 + HP15_1946 0.51 +0.9
2,066,062 + HP15_1946 0.59 -0.8
2,066,080 - HP15_1946 0.61 +1.0
2,066,101 - HP15_1946 0.63 -0.3
2,066,108 + HP15_1946 0.64 +0.3
2,066,151 + HP15_1946 0.68 +0.9
2,066,159 - HP15_1946 0.69 +0.6
2,066,177 + HP15_1946 0.71 +0.2
2,066,185 - HP15_1946 0.72 -1.8
2,066,185 - HP15_1946 0.72 -2.0
2,066,248 + HP15_1946 0.78 +0.5
2,066,250 - HP15_1946 0.79 -0.0
2,066,269 - HP15_1946 0.81 +0.0
2,066,302 - HP15_1946 0.84 +0.2
2,066,304 + HP15_1946 0.84 -0.6
2,066,307 - HP15_1946 0.85 +0.6
2,066,309 + HP15_1946 0.85 +0.3
2,066,317 - HP15_1946 0.86 +0.5

Or see this region's nucleotide sequence