Strain Fitness in Marinobacter adhaerens HP15 around HP15_194

Experiment: m.b. Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_191 and HP15_192 are separated by 445 nucleotidesHP15_192 and HP15_193 overlap by 4 nucleotidesHP15_193 and HP15_194 overlap by 11 nucleotidesHP15_194 and HP15_195 are separated by 260 nucleotidesHP15_195 and HP15_196 overlap by 2 nucleotides HP15_191: HP15_191 - Hg(II)--responsive transcriptional regulator, at 180,614 to 181,048 _191 HP15_192: HP15_192 - Hg(II)-transport protein perimplasmic component, at 181,494 to 181,796 _192 HP15_193: HP15_193 - conserved hypothetical protein, membrane, at 181,793 to 182,053 _193 HP15_194: HP15_194 - mercuric ion reductase, at 182,043 to 183,449 _194 HP15_195: HP15_195 - hypothetical protein, at 183,710 to 183,814 _195 HP15_196: HP15_196 - cytochrome C-like protein, at 183,813 to 184,241 _196 Position (kb) 182 183 184Strain fitness (log2 ratio) -2 -1 0 1 2 3at 181.098 kb on - strandat 181.110 kb on + strandat 181.152 kb on + strandat 181.164 kb on + strandat 181.344 kb on + strandat 181.362 kb on + strandat 181.433 kb on - strandat 181.459 kb on - strandat 181.520 kb on + strandat 181.522 kb on + strandat 181.544 kb on + strand, within HP15_192at 181.572 kb on + strand, within HP15_192at 181.584 kb on + strand, within HP15_192at 181.592 kb on - strand, within HP15_192at 181.602 kb on + strand, within HP15_192at 181.634 kb on + strand, within HP15_192at 181.661 kb on + strand, within HP15_192at 181.669 kb on - strand, within HP15_192at 181.669 kb on - strand, within HP15_192at 181.698 kb on - strand, within HP15_192at 181.716 kb on - strand, within HP15_192at 181.716 kb on - strand, within HP15_192at 181.732 kb on - strand, within HP15_192at 181.751 kb on + strand, within HP15_192at 181.790 kb on + strandat 181.826 kb on - strand, within HP15_193at 181.838 kb on + strand, within HP15_193at 181.857 kb on + strand, within HP15_193at 181.857 kb on + strand, within HP15_193at 181.890 kb on + strand, within HP15_193at 181.957 kb on - strand, within HP15_193at 181.959 kb on + strand, within HP15_193at 181.959 kb on + strand, within HP15_193at 181.967 kb on - strand, within HP15_193at 181.975 kb on - strand, within HP15_193at 182.114 kb on - strandat 182.142 kb on - strandat 182.333 kb on + strand, within HP15_194at 182.367 kb on + strand, within HP15_194at 182.382 kb on + strand, within HP15_194at 182.488 kb on + strand, within HP15_194at 182.522 kb on + strand, within HP15_194at 182.530 kb on + strand, within HP15_194at 182.530 kb on + strand, within HP15_194at 182.530 kb on + strand, within HP15_194at 182.538 kb on - strand, within HP15_194at 182.538 kb on - strand, within HP15_194at 182.622 kb on + strand, within HP15_194at 182.676 kb on + strand, within HP15_194at 182.684 kb on - strand, within HP15_194at 182.737 kb on + strand, within HP15_194at 182.745 kb on - strand, within HP15_194at 182.760 kb on + strand, within HP15_194at 182.760 kb on - strand, within HP15_194at 182.760 kb on - strand, within HP15_194at 182.879 kb on - strand, within HP15_194at 182.924 kb on - strand, within HP15_194at 182.964 kb on + strand, within HP15_194at 183.082 kb on - strand, within HP15_194at 183.138 kb on + strand, within HP15_194at 183.143 kb on + strand, within HP15_194at 183.151 kb on - strand, within HP15_194at 183.151 kb on - strand, within HP15_194at 183.151 kb on - strand, within HP15_194at 183.151 kb on - strand, within HP15_194at 183.151 kb on - strand, within HP15_194at 183.153 kb on - strand, within HP15_194at 183.157 kb on + strand, within HP15_194at 183.165 kb on - strand, within HP15_194at 183.235 kb on - strand, within HP15_194at 183.245 kb on + strand, within HP15_194at 183.256 kb on + strand, within HP15_194at 183.327 kb on + strandat 183.426 kb on - strandat 183.471 kb on - strandat 183.662 kb on + strandat 183.662 kb on + strandat 183.662 kb on + strandat 183.662 kb on + strandat 183.670 kb on - strandat 183.670 kb on - strandat 183.670 kb on - strandat 183.698 kb on + strandat 183.790 kb on - strand, within HP15_195at 183.792 kb on + strand, within HP15_195at 184.038 kb on + strand, within HP15_196at 184.092 kb on - strand, within HP15_196at 184.246 kb on + strandat 184.256 kb on - strandat 184.394 kb on + strandat 184.394 kb on + strandat 184.402 kb on - strandat 184.425 kb on + strandat 184.432 kb on + strandat 184.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.5 mg/ml
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181,098 - -0.3
181,110 + +0.6
181,152 + -0.7
181,164 + -0.3
181,344 + +2.2
181,362 + -0.6
181,433 - -0.8
181,459 - +0.7
181,520 + +0.8
181,522 + +0.3
181,544 + HP15_192 0.17 +0.4
181,572 + HP15_192 0.26 +1.0
181,584 + HP15_192 0.30 -0.2
181,592 - HP15_192 0.32 -1.4
181,602 + HP15_192 0.36 -0.8
181,634 + HP15_192 0.46 -0.9
181,661 + HP15_192 0.55 -0.1
181,669 - HP15_192 0.58 +0.2
181,669 - HP15_192 0.58 -0.1
181,698 - HP15_192 0.67 -0.4
181,716 - HP15_192 0.73 +0.2
181,716 - HP15_192 0.73 -0.6
181,732 - HP15_192 0.79 +0.6
181,751 + HP15_192 0.85 -0.3
181,790 + -0.8
181,826 - HP15_193 0.13 -1.6
181,838 + HP15_193 0.17 +0.2
181,857 + HP15_193 0.25 +0.0
181,857 + HP15_193 0.25 +0.2
181,890 + HP15_193 0.37 +1.6
181,957 - HP15_193 0.63 -0.4
181,959 + HP15_193 0.64 +0.0
181,959 + HP15_193 0.64 +0.6
181,967 - HP15_193 0.67 +0.1
181,975 - HP15_193 0.70 +0.5
182,114 - +0.8
182,142 - +0.0
182,333 + HP15_194 0.21 -0.1
182,367 + HP15_194 0.23 -0.9
182,382 + HP15_194 0.24 +0.2
182,488 + HP15_194 0.32 +0.2
182,522 + HP15_194 0.34 +0.2
182,530 + HP15_194 0.35 +0.4
182,530 + HP15_194 0.35 +0.4
182,530 + HP15_194 0.35 -0.2
182,538 - HP15_194 0.35 -0.3
182,538 - HP15_194 0.35 +0.1
182,622 + HP15_194 0.41 +0.5
182,676 + HP15_194 0.45 +0.6
182,684 - HP15_194 0.46 +0.2
182,737 + HP15_194 0.49 -0.2
182,745 - HP15_194 0.50 +0.7
182,760 + HP15_194 0.51 -0.3
182,760 - HP15_194 0.51 +0.0
182,760 - HP15_194 0.51 +0.8
182,879 - HP15_194 0.59 +0.0
182,924 - HP15_194 0.63 -0.9
182,964 + HP15_194 0.65 +1.1
183,082 - HP15_194 0.74 +0.5
183,138 + HP15_194 0.78 -0.0
183,143 + HP15_194 0.78 +0.2
183,151 - HP15_194 0.79 -0.0
183,151 - HP15_194 0.79 +0.6
183,151 - HP15_194 0.79 +0.2
183,151 - HP15_194 0.79 -0.2
183,151 - HP15_194 0.79 +1.0
183,153 - HP15_194 0.79 -1.1
183,157 + HP15_194 0.79 +0.1
183,165 - HP15_194 0.80 +2.2
183,235 - HP15_194 0.85 -2.1
183,245 + HP15_194 0.85 +0.2
183,256 + HP15_194 0.86 -0.3
183,327 + -0.3
183,426 - -0.3
183,471 - +0.0
183,662 + -0.8
183,662 + -0.1
183,662 + -0.1
183,662 + +0.5
183,670 - -1.7
183,670 - +3.6
183,670 - +0.1
183,698 + -2.6
183,790 - HP15_195 0.76 -1.0
183,792 + HP15_195 0.78 +0.4
184,038 + HP15_196 0.52 -0.1
184,092 - HP15_196 0.65 -0.6
184,246 + -0.3
184,256 - +0.1
184,394 + +0.6
184,394 + -0.5
184,402 - -0.3
184,425 + +0.0
184,432 + +0.4
184,448 - +0.1

Or see this region's nucleotide sequence