Strain Fitness in Marinobacter adhaerens HP15 around HP15_1799

Experiment: m.b. Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1798 and HP15_1799 are separated by 231 nucleotidesHP15_1799 and HP15_1800 are separated by 62 nucleotidesHP15_1800 and HP15_1801 are separated by 4 nucleotides HP15_1798: HP15_1798 - sohB protein, peptidase U7 family, at 1,890,744 to 1,891,805 _1798 HP15_1799: HP15_1799 - sterol-binding domain protein, at 1,892,037 to 1,892,351 _1799 HP15_1800: HP15_1800 - conserved hypothetical protein, membrane, at 1,892,414 to 1,893,061 _1800 HP15_1801: HP15_1801 - methyl-accepting chemotaxis protein, at 1,893,066 to 1,894,771 _1801 Position (kb) 1892 1893Strain fitness (log2 ratio) -2 -1 0 1 2at 1891.223 kb on - strand, within HP15_1798at 1891.311 kb on - strand, within HP15_1798at 1891.408 kb on + strand, within HP15_1798at 1891.413 kb on + strand, within HP15_1798at 1891.445 kb on + strand, within HP15_1798at 1891.479 kb on + strand, within HP15_1798at 1891.704 kb on + strandat 1892.011 kb on - strandat 1892.098 kb on + strand, within HP15_1799at 1892.105 kb on - strand, within HP15_1799at 1892.105 kb on - strand, within HP15_1799at 1892.105 kb on - strand, within HP15_1799at 1892.140 kb on - strand, within HP15_1799at 1892.203 kb on + strand, within HP15_1799at 1892.211 kb on - strand, within HP15_1799at 1892.213 kb on + strand, within HP15_1799at 1892.283 kb on + strand, within HP15_1799at 1892.336 kb on + strandat 1892.635 kb on - strand, within HP15_1800at 1892.642 kb on + strand, within HP15_1800at 1892.658 kb on - strand, within HP15_1800at 1892.841 kb on - strand, within HP15_1800at 1892.867 kb on - strand, within HP15_1800at 1892.906 kb on + strand, within HP15_1800at 1893.018 kb on - strandat 1893.312 kb on + strand, within HP15_1801at 1893.319 kb on + strand, within HP15_1801at 1893.325 kb on - strand, within HP15_1801

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.5 mg/ml
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1,891,223 - HP15_1798 0.45 -2.2
1,891,311 - HP15_1798 0.53 +0.2
1,891,408 + HP15_1798 0.63 -0.9
1,891,413 + HP15_1798 0.63 -0.4
1,891,445 + HP15_1798 0.66 -0.2
1,891,479 + HP15_1798 0.69 -0.2
1,891,704 + -0.2
1,892,011 - +2.0
1,892,098 + HP15_1799 0.19 +2.2
1,892,105 - HP15_1799 0.22 +2.0
1,892,105 - HP15_1799 0.22 +2.2
1,892,105 - HP15_1799 0.22 +1.4
1,892,140 - HP15_1799 0.33 +1.9
1,892,203 + HP15_1799 0.53 +2.3
1,892,211 - HP15_1799 0.55 +2.4
1,892,213 + HP15_1799 0.56 +1.7
1,892,283 + HP15_1799 0.78 +2.0
1,892,336 + +2.0
1,892,635 - HP15_1800 0.34 -0.1
1,892,642 + HP15_1800 0.35 +0.2
1,892,658 - HP15_1800 0.38 -0.6
1,892,841 - HP15_1800 0.66 -0.5
1,892,867 - HP15_1800 0.70 +0.5
1,892,906 + HP15_1800 0.76 -0.1
1,893,018 - -0.5
1,893,312 + HP15_1801 0.14 -0.6
1,893,319 + HP15_1801 0.15 +0.8
1,893,325 - HP15_1801 0.15 -0.1

Or see this region's nucleotide sequence