Experiment: m.b. Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1598 and HP15_1599 are separated by 26 nucleotides HP15_1599 and HP15_1600 are separated by 123 nucleotides HP15_1600 and HP15_1601 are separated by 8 nucleotides
HP15_1598: HP15_1598 - FAD dependent oxidoreductase, at 1,694,035 to 1,695,633
_1598
HP15_1599: HP15_1599 - alkylglycerone-phosphate synthase, at 1,695,660 to 1,697,264
_1599
HP15_1600: HP15_1600 - transglutaminase-like cysteine peptidase-like protein, at 1,697,388 to 1,698,050
_1600
HP15_1601: HP15_1601 - general secretion pathway protein C-like protein, at 1,698,059 to 1,698,709
_1601
Position (kb)
1695
1696
1697
1698 Strain fitness (log2 ratio)
-1
0
1
2 at 1694.806 kb on + strand, within HP15_1598 at 1694.814 kb on - strand, within HP15_1598 at 1694.865 kb on + strand, within HP15_1598 at 1694.870 kb on + strand, within HP15_1598 at 1694.873 kb on - strand, within HP15_1598 at 1694.873 kb on - strand, within HP15_1598 at 1694.901 kb on + strand, within HP15_1598 at 1694.903 kb on + strand, within HP15_1598 at 1694.904 kb on - strand, within HP15_1598 at 1694.911 kb on - strand, within HP15_1598 at 1695.028 kb on - strand, within HP15_1598 at 1695.272 kb on + strand, within HP15_1598 at 1695.284 kb on + strand, within HP15_1598 at 1695.292 kb on - strand, within HP15_1598 at 1695.356 kb on - strand, within HP15_1598 at 1695.616 kb on - strand at 1695.698 kb on + strand at 1695.706 kb on - strand at 1695.706 kb on - strand at 1695.714 kb on - strand at 1695.827 kb on + strand, within HP15_1599 at 1695.827 kb on + strand, within HP15_1599 at 1695.835 kb on - strand, within HP15_1599 at 1695.835 kb on - strand, within HP15_1599 at 1696.008 kb on - strand, within HP15_1599 at 1696.032 kb on + strand, within HP15_1599 at 1696.061 kb on + strand, within HP15_1599 at 1696.066 kb on + strand, within HP15_1599 at 1696.180 kb on + strand, within HP15_1599 at 1696.188 kb on - strand, within HP15_1599 at 1696.251 kb on + strand, within HP15_1599 at 1696.363 kb on - strand, within HP15_1599 at 1696.399 kb on - strand, within HP15_1599 at 1696.447 kb on - strand, within HP15_1599 at 1696.461 kb on - strand, within HP15_1599 at 1696.504 kb on - strand, within HP15_1599 at 1696.536 kb on + strand, within HP15_1599 at 1696.544 kb on - strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.579 kb on - strand, within HP15_1599 at 1696.579 kb on - strand, within HP15_1599 at 1696.579 kb on - strand, within HP15_1599 at 1696.682 kb on - strand, within HP15_1599 at 1696.747 kb on - strand, within HP15_1599 at 1696.784 kb on + strand, within HP15_1599 at 1696.886 kb on + strand, within HP15_1599 at 1696.933 kb on + strand, within HP15_1599 at 1696.933 kb on + strand, within HP15_1599 at 1696.933 kb on + strand, within HP15_1599 at 1696.941 kb on - strand, within HP15_1599 at 1696.941 kb on - strand, within HP15_1599 at 1697.021 kb on - strand, within HP15_1599 at 1697.073 kb on + strand, within HP15_1599 at 1697.099 kb on - strand, within HP15_1599 at 1697.199 kb on + strand at 1697.199 kb on + strand at 1697.397 kb on + strand at 1697.423 kb on + strand at 1697.423 kb on + strand at 1697.433 kb on + strand at 1697.628 kb on - strand, within HP15_1600 at 1697.644 kb on - strand, within HP15_1600 at 1697.659 kb on + strand, within HP15_1600 at 1697.697 kb on + strand, within HP15_1600 at 1697.853 kb on + strand, within HP15_1600 at 1698.081 kb on + strand at 1698.089 kb on - strand at 1698.089 kb on - strand at 1698.091 kb on + strand at 1698.099 kb on - strand at 1698.122 kb on - strand at 1698.182 kb on - strand, within HP15_1601 at 1698.195 kb on + strand, within HP15_1601 at 1698.260 kb on - strand, within HP15_1601
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.5 mg/ml remove 1,694,806 + HP15_1598 0.48 -0.1 1,694,814 - HP15_1598 0.49 -0.3 1,694,865 + HP15_1598 0.52 -0.2 1,694,870 + HP15_1598 0.52 +0.2 1,694,873 - HP15_1598 0.52 +0.7 1,694,873 - HP15_1598 0.52 -0.1 1,694,901 + HP15_1598 0.54 +0.7 1,694,903 + HP15_1598 0.54 -0.2 1,694,904 - HP15_1598 0.54 +0.7 1,694,911 - HP15_1598 0.55 +0.3 1,695,028 - HP15_1598 0.62 +1.1 1,695,272 + HP15_1598 0.77 -0.2 1,695,284 + HP15_1598 0.78 +0.5 1,695,292 - HP15_1598 0.79 +0.1 1,695,356 - HP15_1598 0.83 +0.2 1,695,616 - +0.3 1,695,698 + -0.3 1,695,706 - -1.3 1,695,706 - +0.4 1,695,714 - +0.8 1,695,827 + HP15_1599 0.10 +0.1 1,695,827 + HP15_1599 0.10 +0.4 1,695,835 - HP15_1599 0.11 -0.0 1,695,835 - HP15_1599 0.11 +0.4 1,696,008 - HP15_1599 0.22 +0.2 1,696,032 + HP15_1599 0.23 +0.8 1,696,061 + HP15_1599 0.25 +0.4 1,696,066 + HP15_1599 0.25 +0.2 1,696,180 + HP15_1599 0.32 -0.5 1,696,188 - HP15_1599 0.33 +1.6 1,696,251 + HP15_1599 0.37 -0.1 1,696,363 - HP15_1599 0.44 -0.2 1,696,399 - HP15_1599 0.46 -1.5 1,696,447 - HP15_1599 0.49 +0.4 1,696,461 - HP15_1599 0.50 -0.7 1,696,504 - HP15_1599 0.53 +0.1 1,696,536 + HP15_1599 0.55 +0.7 1,696,544 - HP15_1599 0.55 -0.7 1,696,571 + HP15_1599 0.57 -0.1 1,696,571 + HP15_1599 0.57 -0.2 1,696,571 + HP15_1599 0.57 +0.4 1,696,571 + HP15_1599 0.57 +0.6 1,696,571 + HP15_1599 0.57 -0.6 1,696,571 + HP15_1599 0.57 -0.3 1,696,571 + HP15_1599 0.57 -0.2 1,696,579 - HP15_1599 0.57 -0.7 1,696,579 - HP15_1599 0.57 +0.1 1,696,579 - HP15_1599 0.57 -0.2 1,696,682 - HP15_1599 0.64 -0.1 1,696,747 - HP15_1599 0.68 +0.6 1,696,784 + HP15_1599 0.70 +2.1 1,696,886 + HP15_1599 0.76 -0.1 1,696,933 + HP15_1599 0.79 -0.5 1,696,933 + HP15_1599 0.79 +0.2 1,696,933 + HP15_1599 0.79 -0.4 1,696,941 - HP15_1599 0.80 +0.8 1,696,941 - HP15_1599 0.80 +0.0 1,697,021 - HP15_1599 0.85 -0.4 1,697,073 + HP15_1599 0.88 -0.4 1,697,099 - HP15_1599 0.90 -0.2 1,697,199 + +0.0 1,697,199 + -0.2 1,697,397 + +0.3 1,697,423 + +0.0 1,697,423 + -0.7 1,697,433 + -1.2 1,697,628 - HP15_1600 0.36 +0.0 1,697,644 - HP15_1600 0.39 -0.3 1,697,659 + HP15_1600 0.41 +0.1 1,697,697 + HP15_1600 0.47 -1.3 1,697,853 + HP15_1600 0.70 +0.0 1,698,081 + +0.3 1,698,089 - -0.4 1,698,089 - +0.2 1,698,091 + -1.0 1,698,099 - -0.6 1,698,122 - -0.2 1,698,182 - HP15_1601 0.19 -0.3 1,698,195 + HP15_1601 0.21 -0.1 1,698,260 - HP15_1601 0.31 +0.2
Or see this region's nucleotide sequence