Strain Fitness in Dechlorosoma suillum PS around Dsui_3412

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3410 and Dsui_3411 are separated by 21 nucleotidesDsui_3411 and Dsui_3412 are separated by 61 nucleotidesDsui_3412 and Dsui_3413 are separated by 6 nucleotides Dsui_3410: Dsui_3410 - serine/threonine protein phosphatase, at 3,663,215 to 3,663,955 _3410 Dsui_3411: Dsui_3411 - hypothetical protein, at 3,663,977 to 3,664,288 _3411 Dsui_3412: Dsui_3412 - putative signal transduction protein, at 3,664,350 to 3,665,246 _3412 Dsui_3413: Dsui_3413 - Fe-S oxidoreductase, at 3,665,253 to 3,666,515 _3413 Position (kb) 3664 3665 3666Strain fitness (log2 ratio) -2 -1 0 1 2at 3663.448 kb on + strand, within Dsui_3410at 3663.493 kb on + strand, within Dsui_3410at 3663.501 kb on - strand, within Dsui_3410at 3663.544 kb on - strand, within Dsui_3410at 3663.546 kb on + strand, within Dsui_3410at 3663.551 kb on + strand, within Dsui_3410at 3663.656 kb on - strand, within Dsui_3410at 3663.661 kb on - strand, within Dsui_3410at 3663.669 kb on - strand, within Dsui_3410at 3663.746 kb on - strand, within Dsui_3410at 3663.845 kb on + strandat 3663.981 kb on - strandat 3664.000 kb on - strandat 3664.062 kb on - strand, within Dsui_3411at 3664.155 kb on + strand, within Dsui_3411at 3664.163 kb on - strand, within Dsui_3411at 3664.204 kb on + strand, within Dsui_3411at 3664.214 kb on + strand, within Dsui_3411at 3664.248 kb on - strand, within Dsui_3411at 3664.291 kb on - strandat 3664.291 kb on - strandat 3664.294 kb on - strandat 3664.307 kb on - strandat 3664.345 kb on - strandat 3664.356 kb on - strandat 3664.397 kb on - strandat 3664.449 kb on + strandat 3664.457 kb on - strand, within Dsui_3412at 3664.481 kb on + strand, within Dsui_3412at 3664.522 kb on - strand, within Dsui_3412at 3664.602 kb on + strand, within Dsui_3412at 3664.667 kb on + strandat 3664.672 kb on + strand, within Dsui_3412at 3664.798 kb on + strand, within Dsui_3412at 3664.850 kb on - strand, within Dsui_3412at 3664.873 kb on + strand, within Dsui_3412at 3664.881 kb on - strand, within Dsui_3412at 3664.917 kb on + strand, within Dsui_3412at 3664.922 kb on + strand, within Dsui_3412at 3664.936 kb on - strand, within Dsui_3412at 3664.940 kb on + strand, within Dsui_3412at 3664.948 kb on - strand, within Dsui_3412at 3664.989 kb on + strand, within Dsui_3412at 3665.007 kb on + strand, within Dsui_3412at 3665.010 kb on - strand, within Dsui_3412at 3665.025 kb on - strand, within Dsui_3412at 3665.113 kb on + strandat 3665.157 kb on - strandat 3665.204 kb on - strandat 3665.217 kb on - strandat 3665.231 kb on + strandat 3665.308 kb on + strandat 3665.346 kb on - strandat 3665.403 kb on + strand, within Dsui_3413at 3665.429 kb on + strandat 3665.515 kb on - strand, within Dsui_3413at 3665.554 kb on + strand, within Dsui_3413at 3665.562 kb on - strand, within Dsui_3413at 3666.048 kb on + strandat 3666.102 kb on - strand, within Dsui_3413

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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3,663,448 + Dsui_3410 0.31 +0.0
3,663,493 + Dsui_3410 0.38 +0.6
3,663,501 - Dsui_3410 0.39 -0.5
3,663,544 - Dsui_3410 0.44 -1.9
3,663,546 + Dsui_3410 0.45 +1.4
3,663,551 + Dsui_3410 0.45 -0.5
3,663,656 - Dsui_3410 0.60 +0.4
3,663,661 - Dsui_3410 0.60 -0.4
3,663,669 - Dsui_3410 0.61 -0.5
3,663,746 - Dsui_3410 0.72 +0.3
3,663,845 + -0.1
3,663,981 - +0.2
3,664,000 - -0.2
3,664,062 - Dsui_3411 0.27 +0.1
3,664,155 + Dsui_3411 0.57 -1.0
3,664,163 - Dsui_3411 0.60 -1.4
3,664,204 + Dsui_3411 0.73 +0.0
3,664,214 + Dsui_3411 0.76 -0.1
3,664,248 - Dsui_3411 0.87 -0.1
3,664,291 - +0.3
3,664,291 - +0.3
3,664,294 - +0.5
3,664,307 - -0.4
3,664,345 - -0.2
3,664,356 - -0.0
3,664,397 - -0.8
3,664,449 + +0.6
3,664,457 - Dsui_3412 0.12 -0.3
3,664,481 + Dsui_3412 0.15 -0.7
3,664,522 - Dsui_3412 0.19 -0.2
3,664,602 + Dsui_3412 0.28 +1.1
3,664,667 + -0.1
3,664,672 + Dsui_3412 0.36 -1.1
3,664,798 + Dsui_3412 0.50 +1.9
3,664,850 - Dsui_3412 0.56 -0.5
3,664,873 + Dsui_3412 0.58 -0.1
3,664,881 - Dsui_3412 0.59 +0.6
3,664,917 + Dsui_3412 0.63 -1.0
3,664,922 + Dsui_3412 0.64 +0.6
3,664,936 - Dsui_3412 0.65 -1.9
3,664,940 + Dsui_3412 0.66 +0.3
3,664,948 - Dsui_3412 0.67 +0.5
3,664,989 + Dsui_3412 0.71 -0.3
3,665,007 + Dsui_3412 0.73 -0.6
3,665,010 - Dsui_3412 0.74 -0.6
3,665,025 - Dsui_3412 0.75 +0.3
3,665,113 + +0.6
3,665,157 - +0.9
3,665,204 - +0.1
3,665,217 - -0.2
3,665,231 + -0.0
3,665,308 + -1.7
3,665,346 - -2.3
3,665,403 + Dsui_3413 0.12 +0.2
3,665,429 + +0.4
3,665,515 - Dsui_3413 0.21 -0.1
3,665,554 + Dsui_3413 0.24 -1.9
3,665,562 - Dsui_3413 0.24 -0.7
3,666,048 + +2.2
3,666,102 - Dsui_3413 0.67 -1.0

Or see this region's nucleotide sequence