Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3408 and Dsui_3409 are separated by 135 nucleotides Dsui_3409 and Dsui_3410 are separated by 68 nucleotides Dsui_3410 and Dsui_3411 are separated by 21 nucleotides Dsui_3411 and Dsui_3412 are separated by 61 nucleotides
Dsui_3408: Dsui_3408 - hypothetical protein, at 3,662,034 to 3,662,444
_3408
Dsui_3409: Dsui_3409 - hypothetical protein, at 3,662,580 to 3,663,146
_3409
Dsui_3410: Dsui_3410 - serine/threonine protein phosphatase, at 3,663,215 to 3,663,955
_3410
Dsui_3411: Dsui_3411 - hypothetical protein, at 3,663,977 to 3,664,288
_3411
Dsui_3412: Dsui_3412 - putative signal transduction protein, at 3,664,350 to 3,665,246
_3412
Position (kb)
3663
3664 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3662.218 kb on + strand, within Dsui_3408 at 3662.279 kb on - strand, within Dsui_3408 at 3662.351 kb on - strand, within Dsui_3408 at 3662.363 kb on - strand, within Dsui_3408 at 3662.365 kb on - strand, within Dsui_3408 at 3662.389 kb on + strand, within Dsui_3408 at 3662.420 kb on - strand at 3662.430 kb on - strand at 3662.457 kb on + strand at 3662.621 kb on - strand at 3662.669 kb on - strand at 3662.734 kb on + strand at 3662.734 kb on + strand at 3662.756 kb on - strand, within Dsui_3409 at 3662.768 kb on + strand, within Dsui_3409 at 3662.836 kb on + strand, within Dsui_3409 at 3662.844 kb on - strand, within Dsui_3409 at 3662.844 kb on - strand at 3662.879 kb on - strand, within Dsui_3409 at 3662.908 kb on + strand, within Dsui_3409 at 3662.922 kb on - strand at 3663.000 kb on + strand, within Dsui_3409 at 3663.008 kb on - strand, within Dsui_3409 at 3663.015 kb on + strand at 3663.083 kb on + strand, within Dsui_3409 at 3663.105 kb on + strand at 3663.113 kb on - strand at 3663.213 kb on + strand at 3663.243 kb on + strand at 3663.248 kb on + strand at 3663.267 kb on - strand at 3663.267 kb on - strand at 3663.448 kb on + strand, within Dsui_3410 at 3663.493 kb on + strand, within Dsui_3410 at 3663.501 kb on - strand, within Dsui_3410 at 3663.544 kb on - strand, within Dsui_3410 at 3663.546 kb on + strand, within Dsui_3410 at 3663.551 kb on + strand, within Dsui_3410 at 3663.656 kb on - strand, within Dsui_3410 at 3663.661 kb on - strand, within Dsui_3410 at 3663.669 kb on - strand, within Dsui_3410 at 3663.746 kb on - strand, within Dsui_3410 at 3663.845 kb on + strand at 3663.981 kb on - strand at 3664.000 kb on - strand at 3664.062 kb on - strand, within Dsui_3411 at 3664.155 kb on + strand, within Dsui_3411 at 3664.163 kb on - strand, within Dsui_3411 at 3664.204 kb on + strand, within Dsui_3411 at 3664.214 kb on + strand, within Dsui_3411 at 3664.248 kb on - strand, within Dsui_3411 at 3664.291 kb on - strand at 3664.291 kb on - strand at 3664.294 kb on - strand at 3664.307 kb on - strand at 3664.345 kb on - strand at 3664.356 kb on - strand at 3664.397 kb on - strand at 3664.449 kb on + strand at 3664.457 kb on - strand, within Dsui_3412 at 3664.481 kb on + strand, within Dsui_3412 at 3664.522 kb on - strand, within Dsui_3412 at 3664.602 kb on + strand, within Dsui_3412 at 3664.667 kb on + strand at 3664.672 kb on + strand, within Dsui_3412 at 3664.798 kb on + strand, within Dsui_3412 at 3664.850 kb on - strand, within Dsui_3412 at 3664.873 kb on + strand, within Dsui_3412 at 3664.881 kb on - strand, within Dsui_3412 at 3664.917 kb on + strand, within Dsui_3412 at 3664.922 kb on + strand, within Dsui_3412 at 3664.936 kb on - strand, within Dsui_3412 at 3664.940 kb on + strand, within Dsui_3412 at 3664.948 kb on - strand, within Dsui_3412
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 3,662,218 + Dsui_3408 0.45 -0.8 3,662,279 - Dsui_3408 0.60 -0.8 3,662,351 - Dsui_3408 0.77 +0.3 3,662,363 - Dsui_3408 0.80 +0.2 3,662,365 - Dsui_3408 0.81 -0.5 3,662,389 + Dsui_3408 0.86 +0.8 3,662,420 - +0.6 3,662,430 - -1.0 3,662,457 + -0.2 3,662,621 - +0.4 3,662,669 - +0.4 3,662,734 + +0.6 3,662,734 + +0.2 3,662,756 - Dsui_3409 0.31 +0.9 3,662,768 + Dsui_3409 0.33 -0.6 3,662,836 + Dsui_3409 0.45 +0.2 3,662,844 - Dsui_3409 0.47 +0.5 3,662,844 - -0.4 3,662,879 - Dsui_3409 0.53 +0.6 3,662,908 + Dsui_3409 0.58 +0.0 3,662,922 - +0.2 3,663,000 + Dsui_3409 0.74 +0.8 3,663,008 - Dsui_3409 0.75 -0.1 3,663,015 + +2.2 3,663,083 + Dsui_3409 0.89 -0.5 3,663,105 + +0.2 3,663,113 - -0.4 3,663,213 + -0.0 3,663,243 + +1.0 3,663,248 + +0.1 3,663,267 - -0.9 3,663,267 - +0.0 3,663,448 + Dsui_3410 0.31 +0.0 3,663,493 + Dsui_3410 0.38 +0.6 3,663,501 - Dsui_3410 0.39 -0.5 3,663,544 - Dsui_3410 0.44 -1.9 3,663,546 + Dsui_3410 0.45 +1.4 3,663,551 + Dsui_3410 0.45 -0.5 3,663,656 - Dsui_3410 0.60 +0.4 3,663,661 - Dsui_3410 0.60 -0.4 3,663,669 - Dsui_3410 0.61 -0.5 3,663,746 - Dsui_3410 0.72 +0.3 3,663,845 + -0.1 3,663,981 - +0.2 3,664,000 - -0.2 3,664,062 - Dsui_3411 0.27 +0.1 3,664,155 + Dsui_3411 0.57 -1.0 3,664,163 - Dsui_3411 0.60 -1.4 3,664,204 + Dsui_3411 0.73 +0.0 3,664,214 + Dsui_3411 0.76 -0.1 3,664,248 - Dsui_3411 0.87 -0.1 3,664,291 - +0.3 3,664,291 - +0.3 3,664,294 - +0.5 3,664,307 - -0.4 3,664,345 - -0.2 3,664,356 - -0.0 3,664,397 - -0.8 3,664,449 + +0.6 3,664,457 - Dsui_3412 0.12 -0.3 3,664,481 + Dsui_3412 0.15 -0.7 3,664,522 - Dsui_3412 0.19 -0.2 3,664,602 + Dsui_3412 0.28 +1.1 3,664,667 + -0.1 3,664,672 + Dsui_3412 0.36 -1.1 3,664,798 + Dsui_3412 0.50 +1.9 3,664,850 - Dsui_3412 0.56 -0.5 3,664,873 + Dsui_3412 0.58 -0.1 3,664,881 - Dsui_3412 0.59 +0.6 3,664,917 + Dsui_3412 0.63 -1.0 3,664,922 + Dsui_3412 0.64 +0.6 3,664,936 - Dsui_3412 0.65 -1.9 3,664,940 + Dsui_3412 0.66 +0.3 3,664,948 - Dsui_3412 0.67 +0.5
Or see this region's nucleotide sequence