Strain Fitness in Dechlorosoma suillum PS around Dsui_3410

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3408 and Dsui_3409 are separated by 135 nucleotidesDsui_3409 and Dsui_3410 are separated by 68 nucleotidesDsui_3410 and Dsui_3411 are separated by 21 nucleotidesDsui_3411 and Dsui_3412 are separated by 61 nucleotides Dsui_3408: Dsui_3408 - hypothetical protein, at 3,662,034 to 3,662,444 _3408 Dsui_3409: Dsui_3409 - hypothetical protein, at 3,662,580 to 3,663,146 _3409 Dsui_3410: Dsui_3410 - serine/threonine protein phosphatase, at 3,663,215 to 3,663,955 _3410 Dsui_3411: Dsui_3411 - hypothetical protein, at 3,663,977 to 3,664,288 _3411 Dsui_3412: Dsui_3412 - putative signal transduction protein, at 3,664,350 to 3,665,246 _3412 Position (kb) 3663 3664Strain fitness (log2 ratio) -2 -1 0 1 2at 3662.218 kb on + strand, within Dsui_3408at 3662.279 kb on - strand, within Dsui_3408at 3662.351 kb on - strand, within Dsui_3408at 3662.363 kb on - strand, within Dsui_3408at 3662.365 kb on - strand, within Dsui_3408at 3662.389 kb on + strand, within Dsui_3408at 3662.420 kb on - strandat 3662.430 kb on - strandat 3662.457 kb on + strandat 3662.621 kb on - strandat 3662.669 kb on - strandat 3662.734 kb on + strandat 3662.734 kb on + strandat 3662.756 kb on - strand, within Dsui_3409at 3662.768 kb on + strand, within Dsui_3409at 3662.836 kb on + strand, within Dsui_3409at 3662.844 kb on - strand, within Dsui_3409at 3662.844 kb on - strandat 3662.879 kb on - strand, within Dsui_3409at 3662.908 kb on + strand, within Dsui_3409at 3662.922 kb on - strandat 3663.000 kb on + strand, within Dsui_3409at 3663.008 kb on - strand, within Dsui_3409at 3663.015 kb on + strandat 3663.083 kb on + strand, within Dsui_3409at 3663.105 kb on + strandat 3663.113 kb on - strandat 3663.213 kb on + strandat 3663.243 kb on + strandat 3663.248 kb on + strandat 3663.267 kb on - strandat 3663.267 kb on - strandat 3663.448 kb on + strand, within Dsui_3410at 3663.493 kb on + strand, within Dsui_3410at 3663.501 kb on - strand, within Dsui_3410at 3663.544 kb on - strand, within Dsui_3410at 3663.546 kb on + strand, within Dsui_3410at 3663.551 kb on + strand, within Dsui_3410at 3663.656 kb on - strand, within Dsui_3410at 3663.661 kb on - strand, within Dsui_3410at 3663.669 kb on - strand, within Dsui_3410at 3663.746 kb on - strand, within Dsui_3410at 3663.845 kb on + strandat 3663.981 kb on - strandat 3664.000 kb on - strandat 3664.062 kb on - strand, within Dsui_3411at 3664.155 kb on + strand, within Dsui_3411at 3664.163 kb on - strand, within Dsui_3411at 3664.204 kb on + strand, within Dsui_3411at 3664.214 kb on + strand, within Dsui_3411at 3664.248 kb on - strand, within Dsui_3411at 3664.291 kb on - strandat 3664.291 kb on - strandat 3664.294 kb on - strandat 3664.307 kb on - strandat 3664.345 kb on - strandat 3664.356 kb on - strandat 3664.397 kb on - strandat 3664.449 kb on + strandat 3664.457 kb on - strand, within Dsui_3412at 3664.481 kb on + strand, within Dsui_3412at 3664.522 kb on - strand, within Dsui_3412at 3664.602 kb on + strand, within Dsui_3412at 3664.667 kb on + strandat 3664.672 kb on + strand, within Dsui_3412at 3664.798 kb on + strand, within Dsui_3412at 3664.850 kb on - strand, within Dsui_3412at 3664.873 kb on + strand, within Dsui_3412at 3664.881 kb on - strand, within Dsui_3412at 3664.917 kb on + strand, within Dsui_3412at 3664.922 kb on + strand, within Dsui_3412at 3664.936 kb on - strand, within Dsui_3412at 3664.940 kb on + strand, within Dsui_3412at 3664.948 kb on - strand, within Dsui_3412

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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3,662,218 + Dsui_3408 0.45 -0.8
3,662,279 - Dsui_3408 0.60 -0.8
3,662,351 - Dsui_3408 0.77 +0.3
3,662,363 - Dsui_3408 0.80 +0.2
3,662,365 - Dsui_3408 0.81 -0.5
3,662,389 + Dsui_3408 0.86 +0.8
3,662,420 - +0.6
3,662,430 - -1.0
3,662,457 + -0.2
3,662,621 - +0.4
3,662,669 - +0.4
3,662,734 + +0.6
3,662,734 + +0.2
3,662,756 - Dsui_3409 0.31 +0.9
3,662,768 + Dsui_3409 0.33 -0.6
3,662,836 + Dsui_3409 0.45 +0.2
3,662,844 - Dsui_3409 0.47 +0.5
3,662,844 - -0.4
3,662,879 - Dsui_3409 0.53 +0.6
3,662,908 + Dsui_3409 0.58 +0.0
3,662,922 - +0.2
3,663,000 + Dsui_3409 0.74 +0.8
3,663,008 - Dsui_3409 0.75 -0.1
3,663,015 + +2.2
3,663,083 + Dsui_3409 0.89 -0.5
3,663,105 + +0.2
3,663,113 - -0.4
3,663,213 + -0.0
3,663,243 + +1.0
3,663,248 + +0.1
3,663,267 - -0.9
3,663,267 - +0.0
3,663,448 + Dsui_3410 0.31 +0.0
3,663,493 + Dsui_3410 0.38 +0.6
3,663,501 - Dsui_3410 0.39 -0.5
3,663,544 - Dsui_3410 0.44 -1.9
3,663,546 + Dsui_3410 0.45 +1.4
3,663,551 + Dsui_3410 0.45 -0.5
3,663,656 - Dsui_3410 0.60 +0.4
3,663,661 - Dsui_3410 0.60 -0.4
3,663,669 - Dsui_3410 0.61 -0.5
3,663,746 - Dsui_3410 0.72 +0.3
3,663,845 + -0.1
3,663,981 - +0.2
3,664,000 - -0.2
3,664,062 - Dsui_3411 0.27 +0.1
3,664,155 + Dsui_3411 0.57 -1.0
3,664,163 - Dsui_3411 0.60 -1.4
3,664,204 + Dsui_3411 0.73 +0.0
3,664,214 + Dsui_3411 0.76 -0.1
3,664,248 - Dsui_3411 0.87 -0.1
3,664,291 - +0.3
3,664,291 - +0.3
3,664,294 - +0.5
3,664,307 - -0.4
3,664,345 - -0.2
3,664,356 - -0.0
3,664,397 - -0.8
3,664,449 + +0.6
3,664,457 - Dsui_3412 0.12 -0.3
3,664,481 + Dsui_3412 0.15 -0.7
3,664,522 - Dsui_3412 0.19 -0.2
3,664,602 + Dsui_3412 0.28 +1.1
3,664,667 + -0.1
3,664,672 + Dsui_3412 0.36 -1.1
3,664,798 + Dsui_3412 0.50 +1.9
3,664,850 - Dsui_3412 0.56 -0.5
3,664,873 + Dsui_3412 0.58 -0.1
3,664,881 - Dsui_3412 0.59 +0.6
3,664,917 + Dsui_3412 0.63 -1.0
3,664,922 + Dsui_3412 0.64 +0.6
3,664,936 - Dsui_3412 0.65 -1.9
3,664,940 + Dsui_3412 0.66 +0.3
3,664,948 - Dsui_3412 0.67 +0.5

Or see this region's nucleotide sequence