Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3172 and Dsui_3173 are separated by 108 nucleotides Dsui_3173 and Dsui_3174 are separated by 104 nucleotides
Dsui_3172: Dsui_3172 - Zn-dependent hydrolase, glyoxylase, at 3,401,439 to 3,402,341
_3172
Dsui_3173: Dsui_3173 - transcriptional regulator, at 3,402,450 to 3,403,376
_3173
Dsui_3174: Dsui_3174 - DNA/RNA helicase, superfamily II, at 3,403,481 to 3,404,902
_3174
Position (kb)
3402
3403
3404 Strain fitness (log2 ratio)
-1
0
1
2 at 3401.478 kb on + strand at 3401.486 kb on - strand at 3401.558 kb on - strand at 3401.739 kb on - strand at 3401.798 kb on + strand at 3401.890 kb on - strand at 3401.989 kb on + strand, within Dsui_3172 at 3401.999 kb on + strand at 3402.000 kb on + strand at 3402.140 kb on - strand at 3402.140 kb on - strand at 3402.150 kb on - strand, within Dsui_3172 at 3402.157 kb on + strand at 3402.191 kb on + strand, within Dsui_3172 at 3402.219 kb on - strand at 3402.228 kb on - strand at 3402.236 kb on + strand at 3402.288 kb on + strand at 3402.502 kb on + strand at 3402.502 kb on + strand at 3402.558 kb on - strand, within Dsui_3173 at 3402.575 kb on - strand, within Dsui_3173 at 3402.585 kb on - strand, within Dsui_3173 at 3402.621 kb on - strand at 3402.621 kb on - strand, within Dsui_3173 at 3402.621 kb on - strand at 3402.709 kb on + strand, within Dsui_3173 at 3402.709 kb on + strand, within Dsui_3173 at 3402.709 kb on + strand, within Dsui_3173 at 3402.833 kb on + strand, within Dsui_3173 at 3402.980 kb on + strand, within Dsui_3173 at 3403.006 kb on - strand at 3403.168 kb on + strand, within Dsui_3173 at 3403.176 kb on - strand at 3403.176 kb on - strand at 3403.183 kb on - strand at 3403.718 kb on + strand at 3403.726 kb on - strand, within Dsui_3174 at 3403.796 kb on - strand, within Dsui_3174 at 3403.961 kb on + strand, within Dsui_3174 at 3404.048 kb on - strand, within Dsui_3174
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 3,401,478 + -1.2 3,401,486 - +0.8 3,401,558 - -1.0 3,401,739 - +1.5 3,401,798 + +1.1 3,401,890 - +1.5 3,401,989 + Dsui_3172 0.61 +0.5 3,401,999 + -0.0 3,402,000 + +2.1 3,402,140 - +1.1 3,402,140 - +1.1 3,402,150 - Dsui_3172 0.79 +0.3 3,402,157 + +1.1 3,402,191 + Dsui_3172 0.83 +1.3 3,402,219 - +0.5 3,402,228 - +1.1 3,402,236 + +1.5 3,402,288 + +1.1 3,402,502 + -0.2 3,402,502 + +0.8 3,402,558 - Dsui_3173 0.12 -1.0 3,402,575 - Dsui_3173 0.13 +1.1 3,402,585 - Dsui_3173 0.15 +2.1 3,402,621 - +1.1 3,402,621 - Dsui_3173 0.18 +0.9 3,402,621 - -0.2 3,402,709 + Dsui_3173 0.28 +0.1 3,402,709 + Dsui_3173 0.28 +1.1 3,402,709 + Dsui_3173 0.28 -1.0 3,402,833 + Dsui_3173 0.41 +0.5 3,402,980 + Dsui_3173 0.57 +0.7 3,403,006 - +1.1 3,403,168 + Dsui_3173 0.77 -0.4 3,403,176 - +1.7 3,403,176 - +1.5 3,403,183 - +0.1 3,403,718 + +2.1 3,403,726 - Dsui_3174 0.17 +0.7 3,403,796 - Dsui_3174 0.22 -1.5 3,403,961 + Dsui_3174 0.34 +0.1 3,404,048 - Dsui_3174 0.40 -0.4
Or see this region's nucleotide sequence