Strain Fitness in Dechlorosoma suillum PS around Dsui_3173

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3172 and Dsui_3173 are separated by 108 nucleotidesDsui_3173 and Dsui_3174 are separated by 104 nucleotides Dsui_3172: Dsui_3172 - Zn-dependent hydrolase, glyoxylase, at 3,401,439 to 3,402,341 _3172 Dsui_3173: Dsui_3173 - transcriptional regulator, at 3,402,450 to 3,403,376 _3173 Dsui_3174: Dsui_3174 - DNA/RNA helicase, superfamily II, at 3,403,481 to 3,404,902 _3174 Position (kb) 3402 3403 3404Strain fitness (log2 ratio) -1 0 1 2at 3401.478 kb on + strandat 3401.486 kb on - strandat 3401.558 kb on - strandat 3401.739 kb on - strandat 3401.798 kb on + strandat 3401.890 kb on - strandat 3401.989 kb on + strand, within Dsui_3172at 3401.999 kb on + strandat 3402.000 kb on + strandat 3402.140 kb on - strandat 3402.140 kb on - strandat 3402.150 kb on - strand, within Dsui_3172at 3402.157 kb on + strandat 3402.191 kb on + strand, within Dsui_3172at 3402.219 kb on - strandat 3402.228 kb on - strandat 3402.236 kb on + strandat 3402.288 kb on + strandat 3402.502 kb on + strandat 3402.502 kb on + strandat 3402.558 kb on - strand, within Dsui_3173at 3402.575 kb on - strand, within Dsui_3173at 3402.585 kb on - strand, within Dsui_3173at 3402.621 kb on - strandat 3402.621 kb on - strand, within Dsui_3173at 3402.621 kb on - strandat 3402.709 kb on + strand, within Dsui_3173at 3402.709 kb on + strand, within Dsui_3173at 3402.709 kb on + strand, within Dsui_3173at 3402.833 kb on + strand, within Dsui_3173at 3402.980 kb on + strand, within Dsui_3173at 3403.006 kb on - strandat 3403.168 kb on + strand, within Dsui_3173at 3403.176 kb on - strandat 3403.176 kb on - strandat 3403.183 kb on - strandat 3403.718 kb on + strandat 3403.726 kb on - strand, within Dsui_3174at 3403.796 kb on - strand, within Dsui_3174at 3403.961 kb on + strand, within Dsui_3174at 3404.048 kb on - strand, within Dsui_3174

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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3,401,478 + -1.2
3,401,486 - +0.8
3,401,558 - -1.0
3,401,739 - +1.5
3,401,798 + +1.1
3,401,890 - +1.5
3,401,989 + Dsui_3172 0.61 +0.5
3,401,999 + -0.0
3,402,000 + +2.1
3,402,140 - +1.1
3,402,140 - +1.1
3,402,150 - Dsui_3172 0.79 +0.3
3,402,157 + +1.1
3,402,191 + Dsui_3172 0.83 +1.3
3,402,219 - +0.5
3,402,228 - +1.1
3,402,236 + +1.5
3,402,288 + +1.1
3,402,502 + -0.2
3,402,502 + +0.8
3,402,558 - Dsui_3173 0.12 -1.0
3,402,575 - Dsui_3173 0.13 +1.1
3,402,585 - Dsui_3173 0.15 +2.1
3,402,621 - +1.1
3,402,621 - Dsui_3173 0.18 +0.9
3,402,621 - -0.2
3,402,709 + Dsui_3173 0.28 +0.1
3,402,709 + Dsui_3173 0.28 +1.1
3,402,709 + Dsui_3173 0.28 -1.0
3,402,833 + Dsui_3173 0.41 +0.5
3,402,980 + Dsui_3173 0.57 +0.7
3,403,006 - +1.1
3,403,168 + Dsui_3173 0.77 -0.4
3,403,176 - +1.7
3,403,176 - +1.5
3,403,183 - +0.1
3,403,718 + +2.1
3,403,726 - Dsui_3174 0.17 +0.7
3,403,796 - Dsui_3174 0.22 -1.5
3,403,961 + Dsui_3174 0.34 +0.1
3,404,048 - Dsui_3174 0.40 -0.4

Or see this region's nucleotide sequence