Strain Fitness in Dechlorosoma suillum PS around Dsui_3140

Experiment: Anaero. lactate (C), perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3139 and Dsui_3140 overlap by 4 nucleotidesDsui_3140 and Dsui_3141 overlap by 1 nucleotides Dsui_3139: Dsui_3139 - outer membrane assembly lipoprotein YfgL, at 3,361,241 to 3,362,389 _3139 Dsui_3140: Dsui_3140 - hypothetical protein, at 3,362,386 to 3,363,060 _3140 Dsui_3141: Dsui_3141 - histidyl-tRNA synthetase, at 3,363,060 to 3,364,358 _3141 Position (kb) 3362 3363 3364Strain fitness (log2 ratio) -2 -1 0 1at 3361.400 kb on - strand, within Dsui_3139at 3361.523 kb on - strand, within Dsui_3139at 3361.617 kb on - strand, within Dsui_3139at 3361.657 kb on - strand, within Dsui_3139at 3361.659 kb on - strand, within Dsui_3139at 3361.715 kb on - strand, within Dsui_3139at 3361.721 kb on - strand, within Dsui_3139at 3362.148 kb on - strand, within Dsui_3139at 3362.209 kb on - strand, within Dsui_3139at 3362.291 kb on - strandat 3362.334 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
remove
3,361,400 - Dsui_3139 0.14 -1.8
3,361,523 - Dsui_3139 0.25 -1.0
3,361,617 - Dsui_3139 0.33 -1.0
3,361,657 - Dsui_3139 0.36 -2.2
3,361,659 - Dsui_3139 0.36 -2.4
3,361,715 - Dsui_3139 0.41 -1.9
3,361,721 - Dsui_3139 0.42 -1.8
3,362,148 - Dsui_3139 0.79 -0.9
3,362,209 - Dsui_3139 0.84 -2.7
3,362,291 - -1.3
3,362,334 - -0.2

Or see this region's nucleotide sequence