Strain Fitness in Dechlorosoma suillum PS around Dsui_3102

Experiment: Anaero. lactate (C), perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3101 and Dsui_3102 are separated by 62 nucleotidesDsui_3102 and Dsui_3103 are separated by 165 nucleotides Dsui_3101: Dsui_3101 - transcriptional regulator, at 3,319,234 to 3,320,133 _3101 Dsui_3102: Dsui_3102 - molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial, at 3,320,196 to 3,320,792 _3102 Dsui_3103: Dsui_3103 - putative signal transduction protein containing EAL and modified HD-GYP domains, at 3,320,958 to 3,322,157 _3103 Position (kb) 3320 3321Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3319.224 kb on + strandat 3319.265 kb on - strandat 3319.275 kb on + strandat 3319.330 kb on + strand, within Dsui_3101at 3319.364 kb on + strand, within Dsui_3101at 3319.391 kb on + strand, within Dsui_3101at 3319.399 kb on - strandat 3319.731 kb on + strand, within Dsui_3101at 3319.765 kb on + strand, within Dsui_3101at 3319.770 kb on + strand, within Dsui_3101at 3320.041 kb on + strand, within Dsui_3101at 3320.182 kb on - strandat 3320.205 kb on + strandat 3320.250 kb on + strandat 3320.357 kb on + strand, within Dsui_3102at 3320.392 kb on - strandat 3320.404 kb on - strandat 3320.404 kb on - strandat 3320.570 kb on + strand, within Dsui_3102at 3320.573 kb on - strandat 3320.683 kb on + strand, within Dsui_3102at 3320.686 kb on + strand, within Dsui_3102at 3320.840 kb on - strandat 3320.973 kb on - strandat 3320.973 kb on - strandat 3320.982 kb on - strandat 3321.027 kb on - strandat 3321.079 kb on + strand, within Dsui_3103at 3321.089 kb on + strand, within Dsui_3103at 3321.102 kb on + strand, within Dsui_3103at 3321.110 kb on - strandat 3321.110 kb on - strand, within Dsui_3103at 3321.112 kb on + strand, within Dsui_3103at 3321.115 kb on - strandat 3321.136 kb on + strand, within Dsui_3103at 3321.203 kb on + strand, within Dsui_3103at 3321.319 kb on - strand, within Dsui_3103at 3321.337 kb on - strand, within Dsui_3103at 3321.359 kb on + strand, within Dsui_3103at 3321.359 kb on + strand, within Dsui_3103at 3321.372 kb on - strand, within Dsui_3103at 3321.465 kb on + strand, within Dsui_3103at 3321.519 kb on - strand, within Dsui_3103at 3321.643 kb on - strand, within Dsui_3103at 3321.682 kb on + strand, within Dsui_3103at 3321.748 kb on + strand, within Dsui_3103

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
remove
3,319,224 + +0.7
3,319,265 - +0.5
3,319,275 + -1.2
3,319,330 + Dsui_3101 0.11 +0.3
3,319,364 + Dsui_3101 0.14 -0.5
3,319,391 + Dsui_3101 0.17 +0.1
3,319,399 - +1.1
3,319,731 + Dsui_3101 0.55 +0.9
3,319,765 + Dsui_3101 0.59 +0.6
3,319,770 + Dsui_3101 0.60 +0.7
3,320,041 + Dsui_3101 0.90 +2.4
3,320,182 - +2.1
3,320,205 + +1.0
3,320,250 + -1.7
3,320,357 + Dsui_3102 0.27 -0.7
3,320,392 - +0.5
3,320,404 - +2.1
3,320,404 - +1.1
3,320,570 + Dsui_3102 0.63 -0.9
3,320,573 - +1.1
3,320,683 + Dsui_3102 0.82 -0.2
3,320,686 + Dsui_3102 0.82 -2.3
3,320,840 - +4.3
3,320,973 - +0.5
3,320,973 - +1.8
3,320,982 - +2.1
3,321,027 - +2.1
3,321,079 + Dsui_3103 0.10 +2.6
3,321,089 + Dsui_3103 0.11 +2.6
3,321,102 + Dsui_3103 0.12 +2.2
3,321,110 - +1.1
3,321,110 - Dsui_3103 0.13 +3.8
3,321,112 + Dsui_3103 0.13 +1.8
3,321,115 - +0.5
3,321,136 + Dsui_3103 0.15 +2.9
3,321,203 + Dsui_3103 0.20 +2.0
3,321,319 - Dsui_3103 0.30 +2.0
3,321,337 - Dsui_3103 0.32 +2.4
3,321,359 + Dsui_3103 0.33 +1.6
3,321,359 + Dsui_3103 0.33 +2.0
3,321,372 - Dsui_3103 0.34 +1.5
3,321,465 + Dsui_3103 0.42 +1.8
3,321,519 - Dsui_3103 0.47 +2.5
3,321,643 - Dsui_3103 0.57 +1.9
3,321,682 + Dsui_3103 0.60 +1.9
3,321,748 + Dsui_3103 0.66 +1.5

Or see this region's nucleotide sequence