Strain Fitness in Dechlorosoma suillum PS around Dsui_3088

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3086 and Dsui_3087 overlap by 1 nucleotidesDsui_3087 and Dsui_3088 are separated by 110 nucleotidesDsui_3088 and Dsui_3089 are separated by 48 nucleotides Dsui_3086: Dsui_3086 - hypothetical protein, at 3,304,920 to 3,306,221 _3086 Dsui_3087: Dsui_3087 - peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 3,306,221 to 3,306,796 _3087 Dsui_3088: Dsui_3088 - peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 3,306,907 to 3,307,398 _3088 Dsui_3089: Dsui_3089 - UDP-2,3-diacylglucosamine hydrolase, at 3,307,447 to 3,308,205 _3089 Position (kb) 3306 3307 3308Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3305.945 kb on - strandat 3305.945 kb on - strand, within Dsui_3086at 3306.038 kb on + strand, within Dsui_3086at 3306.112 kb on + strandat 3306.112 kb on + strandat 3306.120 kb on - strandat 3306.349 kb on + strand, within Dsui_3087at 3306.368 kb on + strand, within Dsui_3087at 3306.556 kb on - strand, within Dsui_3087at 3306.556 kb on - strand, within Dsui_3087at 3306.557 kb on - strand, within Dsui_3087at 3306.630 kb on - strandat 3306.646 kb on + strand, within Dsui_3087at 3306.646 kb on + strand, within Dsui_3087at 3306.650 kb on - strand, within Dsui_3087at 3306.654 kb on - strandat 3306.654 kb on - strand, within Dsui_3087at 3306.654 kb on - strand, within Dsui_3087at 3306.768 kb on + strandat 3306.946 kb on + strandat 3307.192 kb on + strand, within Dsui_3088at 3307.192 kb on + strand, within Dsui_3088at 3307.311 kb on + strand, within Dsui_3088at 3307.311 kb on + strand, within Dsui_3088at 3307.340 kb on + strand, within Dsui_3088at 3308.233 kb on + strandat 3308.247 kb on + strandat 3308.249 kb on - strandat 3308.297 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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3,305,945 - +1.1
3,305,945 - Dsui_3086 0.79 -1.1
3,306,038 + Dsui_3086 0.86 -0.5
3,306,112 + -0.2
3,306,112 + +0.1
3,306,120 - +0.1
3,306,349 + Dsui_3087 0.22 +0.5
3,306,368 + Dsui_3087 0.26 +0.5
3,306,556 - Dsui_3087 0.58 -3.1
3,306,556 - Dsui_3087 0.58 -2.8
3,306,557 - Dsui_3087 0.58 -0.8
3,306,630 - +0.1
3,306,646 + Dsui_3087 0.74 +0.0
3,306,646 + Dsui_3087 0.74 +0.5
3,306,650 - Dsui_3087 0.74 +0.5
3,306,654 - +2.1
3,306,654 - Dsui_3087 0.75 +0.3
3,306,654 - Dsui_3087 0.75 -0.9
3,306,768 + +0.7
3,306,946 + +0.7
3,307,192 + Dsui_3088 0.58 -1.2
3,307,192 + Dsui_3088 0.58 -1.1
3,307,311 + Dsui_3088 0.82 -0.0
3,307,311 + Dsui_3088 0.82 +0.8
3,307,340 + Dsui_3088 0.88 +0.2
3,308,233 + -0.4
3,308,247 + -0.6
3,308,249 - +0.6
3,308,297 + +0.1

Or see this region's nucleotide sequence