Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3083 and Dsui_3084 are separated by 98 nucleotides Dsui_3084 and Dsui_3085 are separated by 274 nucleotides
Dsui_3083: Dsui_3083 - ABC-type branched-chain amino acid transport system, periplasmic component, at 3,300,808 to 3,301,953
_3083
Dsui_3084: Dsui_3084 - cysteinyl-tRNA synthetase, at 3,302,052 to 3,303,482
_3084
Dsui_3085: Dsui_3085 - tetratricopeptide repeat protein, at 3,303,757 to 3,304,920
_3085
Position (kb)
3302
3303
3304 Strain fitness (log2 ratio)
-1
0
1 at 3301.128 kb on - strand, within Dsui_3083 at 3301.188 kb on - strand, within Dsui_3083 at 3301.328 kb on + strand, within Dsui_3083 at 3301.328 kb on + strand, within Dsui_3083 at 3301.444 kb on - strand, within Dsui_3083 at 3301.451 kb on + strand, within Dsui_3083 at 3301.454 kb on - strand, within Dsui_3083 at 3301.481 kb on - strand, within Dsui_3083 at 3301.493 kb on - strand, within Dsui_3083 at 3301.502 kb on + strand, within Dsui_3083 at 3301.557 kb on + strand, within Dsui_3083 at 3301.606 kb on + strand, within Dsui_3083 at 3301.644 kb on + strand, within Dsui_3083 at 3301.645 kb on + strand, within Dsui_3083 at 3301.675 kb on - strand, within Dsui_3083 at 3301.740 kb on - strand, within Dsui_3083 at 3301.749 kb on + strand, within Dsui_3083 at 3301.830 kb on + strand, within Dsui_3083 at 3301.855 kb on - strand at 3301.855 kb on - strand at 3301.878 kb on + strand at 3301.942 kb on + strand at 3301.947 kb on + strand at 3302.052 kb on - strand at 3303.550 kb on - strand at 3303.560 kb on - strand at 3303.597 kb on - strand at 3303.631 kb on - strand at 3303.722 kb on - strand at 3303.750 kb on - strand at 3303.768 kb on + strand at 3303.817 kb on + strand at 3303.863 kb on + strand at 3304.080 kb on + strand, within Dsui_3085 at 3304.107 kb on + strand, within Dsui_3085 at 3304.126 kb on + strand, within Dsui_3085 at 3304.137 kb on + strand, within Dsui_3085 at 3304.137 kb on + strand, within Dsui_3085 at 3304.171 kb on + strand, within Dsui_3085 at 3304.234 kb on + strand, within Dsui_3085 at 3304.279 kb on - strand at 3304.281 kb on + strand, within Dsui_3085 at 3304.482 kb on + strand, within Dsui_3085
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 3,301,128 - Dsui_3083 0.28 +1.3 3,301,188 - Dsui_3083 0.33 +0.5 3,301,328 + Dsui_3083 0.45 -0.5 3,301,328 + Dsui_3083 0.45 -0.4 3,301,444 - Dsui_3083 0.55 -0.1 3,301,451 + Dsui_3083 0.56 -0.2 3,301,454 - Dsui_3083 0.56 +0.1 3,301,481 - Dsui_3083 0.59 -0.6 3,301,493 - Dsui_3083 0.60 -0.3 3,301,502 + Dsui_3083 0.61 +1.0 3,301,557 + Dsui_3083 0.65 -0.3 3,301,606 + Dsui_3083 0.70 -0.0 3,301,644 + Dsui_3083 0.73 -0.1 3,301,645 + Dsui_3083 0.73 +0.0 3,301,675 - Dsui_3083 0.76 -0.6 3,301,740 - Dsui_3083 0.81 -1.2 3,301,749 + Dsui_3083 0.82 +0.5 3,301,830 + Dsui_3083 0.89 -0.3 3,301,855 - -0.4 3,301,855 - -1.0 3,301,878 + +0.0 3,301,942 + -0.7 3,301,947 + -0.2 3,302,052 - +0.7 3,303,550 - -0.6 3,303,560 - +1.1 3,303,597 - -0.1 3,303,631 - +0.5 3,303,722 - -1.5 3,303,750 - -0.3 3,303,768 + -0.7 3,303,817 + +0.5 3,303,863 + -0.5 3,304,080 + Dsui_3085 0.28 -1.0 3,304,107 + Dsui_3085 0.30 -0.4 3,304,126 + Dsui_3085 0.32 -0.9 3,304,137 + Dsui_3085 0.33 +0.1 3,304,137 + Dsui_3085 0.33 -0.2 3,304,171 + Dsui_3085 0.36 -0.2 3,304,234 + Dsui_3085 0.41 +0.5 3,304,279 - +0.5 3,304,281 + Dsui_3085 0.45 -1.1 3,304,482 + Dsui_3085 0.62 -0.2
Or see this region's nucleotide sequence