Strain Fitness in Dechlorosoma suillum PS around Dsui_2928

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2926 and Dsui_2927 are separated by 243 nucleotidesDsui_2927 and Dsui_2928 are separated by 175 nucleotidesDsui_2928 and Dsui_2929 are separated by 108 nucleotidesDsui_2929 and Dsui_2930 are separated by 125 nucleotides Dsui_2926: Dsui_2926 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,129,523 to 3,130,689 _2926 Dsui_2927: Dsui_2927 - cell wall-associated hydrolase, invasion-associated protein, at 3,130,933 to 3,131,454 _2927 Dsui_2928: Dsui_2928 - ABC-type Fe3+ transport system, periplasmic component, at 3,131,630 to 3,132,652 _2928 Dsui_2929: Dsui_2929 - hypothetical protein, at 3,132,761 to 3,133,180 _2929 Dsui_2930: Dsui_2930 - outer membrane protein, at 3,133,306 to 3,134,676 _2930 Position (kb) 3131 3132 3133Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3130.685 kb on + strandat 3130.693 kb on - strandat 3130.706 kb on - strandat 3130.760 kb on + strandat 3130.775 kb on + strandat 3130.903 kb on - strandat 3130.963 kb on + strandat 3130.974 kb on + strandat 3130.974 kb on + strandat 3130.983 kb on - strandat 3131.200 kb on + strand, within Dsui_2927at 3131.574 kb on + strandat 3131.582 kb on - strandat 3131.609 kb on - strandat 3131.615 kb on + strandat 3131.628 kb on + strandat 3131.679 kb on + strandat 3131.716 kb on + strandat 3131.729 kb on + strandat 3131.843 kb on + strand, within Dsui_2928at 3131.843 kb on + strand, within Dsui_2928at 3131.891 kb on - strand, within Dsui_2928at 3131.894 kb on + strand, within Dsui_2928at 3131.907 kb on + strand, within Dsui_2928at 3131.957 kb on - strand, within Dsui_2928at 3132.022 kb on - strand, within Dsui_2928at 3132.045 kb on - strand, within Dsui_2928at 3132.075 kb on - strand, within Dsui_2928at 3132.086 kb on + strand, within Dsui_2928at 3132.094 kb on - strand, within Dsui_2928at 3132.099 kb on - strand, within Dsui_2928at 3132.108 kb on + strand, within Dsui_2928at 3132.178 kb on - strand, within Dsui_2928at 3132.238 kb on + strand, within Dsui_2928at 3132.238 kb on + strand, within Dsui_2928at 3132.241 kb on - strand, within Dsui_2928at 3132.246 kb on - strandat 3132.246 kb on - strand, within Dsui_2928at 3132.246 kb on - strandat 3132.246 kb on - strandat 3132.328 kb on + strandat 3132.427 kb on + strand, within Dsui_2928at 3132.435 kb on - strand, within Dsui_2928at 3132.515 kb on + strand, within Dsui_2928at 3132.526 kb on + strandat 3132.565 kb on + strandat 3132.573 kb on - strandat 3132.634 kb on - strandat 3132.644 kb on - strandat 3132.776 kb on + strandat 3132.880 kb on - strandat 3132.963 kb on - strand, within Dsui_2929at 3132.973 kb on - strand, within Dsui_2929at 3133.000 kb on - strand, within Dsui_2929at 3133.007 kb on + strand, within Dsui_2929at 3133.011 kb on + strand, within Dsui_2929at 3133.250 kb on + strandat 3133.250 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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3,130,685 + +1.2
3,130,693 - -1.1
3,130,706 - -0.3
3,130,760 + +1.2
3,130,775 + -0.4
3,130,903 - +1.2
3,130,963 + +0.1
3,130,974 + +2.7
3,130,974 + +2.2
3,130,983 - +2.2
3,131,200 + Dsui_2927 0.51 +1.3
3,131,574 + -1.6
3,131,582 - +0.6
3,131,609 - -0.1
3,131,615 + +1.0
3,131,628 + +0.7
3,131,679 + +0.5
3,131,716 + -0.0
3,131,729 + +0.2
3,131,843 + Dsui_2928 0.21 +0.2
3,131,843 + Dsui_2928 0.21 -0.8
3,131,891 - Dsui_2928 0.26 -0.2
3,131,894 + Dsui_2928 0.26 -0.8
3,131,907 + Dsui_2928 0.27 +0.4
3,131,957 - Dsui_2928 0.32 -0.3
3,132,022 - Dsui_2928 0.38 +0.1
3,132,045 - Dsui_2928 0.41 -0.1
3,132,075 - Dsui_2928 0.43 -0.4
3,132,086 + Dsui_2928 0.45 +0.2
3,132,094 - Dsui_2928 0.45 -1.6
3,132,099 - Dsui_2928 0.46 +0.1
3,132,108 + Dsui_2928 0.47 -0.5
3,132,178 - Dsui_2928 0.54 -1.0
3,132,238 + Dsui_2928 0.59 +0.2
3,132,238 + Dsui_2928 0.59 +0.3
3,132,241 - Dsui_2928 0.60 -0.8
3,132,246 - +0.2
3,132,246 - Dsui_2928 0.60 -0.3
3,132,246 - +1.2
3,132,246 - -0.1
3,132,328 + +1.2
3,132,427 + Dsui_2928 0.78 +0.2
3,132,435 - Dsui_2928 0.79 -0.5
3,132,515 + Dsui_2928 0.87 -3.2
3,132,526 + +1.2
3,132,565 + +0.9
3,132,573 - -0.6
3,132,634 - -0.6
3,132,644 - +0.4
3,132,776 + +0.3
3,132,880 - +1.9
3,132,963 - Dsui_2929 0.48 +0.3
3,132,973 - Dsui_2929 0.50 -0.0
3,133,000 - Dsui_2929 0.57 -0.3
3,133,007 + Dsui_2929 0.59 +0.3
3,133,011 + Dsui_2929 0.60 -0.0
3,133,250 + +0.9
3,133,250 + +1.9

Or see this region's nucleotide sequence