Strain Fitness in Dechlorosoma suillum PS around Dsui_2712

Experiment: Anaero. lactate (C), perchlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2711 and Dsui_2712 are separated by 2 nucleotidesDsui_2712 and Dsui_2713 are separated by 260 nucleotides Dsui_2711: Dsui_2711 - succinyl-diaminopimelate desuccinylase, at 2,867,837 to 2,868,988 _2711 Dsui_2712: Dsui_2712 - protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific, at 2,868,991 to 2,869,887 _2712 Dsui_2713: Dsui_2713 - membrane protease subunit, stomatin/prohibitin, at 2,870,148 to 2,871,041 _2713 Position (kb) 2868 2869 2870Strain fitness (log2 ratio) -1 0 1 2at 2869.038 kb on + strandat 2869.141 kb on - strand, within Dsui_2712at 2869.141 kb on - strand, within Dsui_2712at 2869.187 kb on - strand, within Dsui_2712at 2869.190 kb on - strand, within Dsui_2712at 2869.194 kb on + strand, within Dsui_2712at 2869.261 kb on + strand, within Dsui_2712at 2869.294 kb on - strand, within Dsui_2712at 2869.466 kb on + strand, within Dsui_2712at 2869.495 kb on - strand, within Dsui_2712at 2869.502 kb on + strand, within Dsui_2712at 2869.506 kb on - strandat 2869.661 kb on + strand, within Dsui_2712at 2869.702 kb on - strand, within Dsui_2712at 2869.702 kb on - strand, within Dsui_2712at 2869.745 kb on - strand, within Dsui_2712at 2869.813 kb on + strandat 2869.889 kb on + strandat 2869.891 kb on - strandat 2869.940 kb on - strandat 2870.006 kb on + strandat 2870.027 kb on - strandat 2870.117 kb on - strandat 2870.201 kb on - strandat 2870.222 kb on - strandat 2870.254 kb on + strand, within Dsui_2713at 2870.262 kb on - strand, within Dsui_2713at 2870.340 kb on + strand, within Dsui_2713at 2870.357 kb on + strand, within Dsui_2713at 2870.471 kb on - strand, within Dsui_2713at 2870.574 kb on + strand, within Dsui_2713at 2870.628 kb on - strand, within Dsui_2713at 2870.656 kb on - strand, within Dsui_2713at 2870.726 kb on + strand, within Dsui_2713at 2870.726 kb on + strand, within Dsui_2713at 2870.818 kb on - strand, within Dsui_2713at 2870.878 kb on - strand, within Dsui_2713

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
remove
2,869,038 + -1.0
2,869,141 - Dsui_2712 0.17 -1.1
2,869,141 - Dsui_2712 0.17 +0.3
2,869,187 - Dsui_2712 0.22 +0.1
2,869,190 - Dsui_2712 0.22 -0.1
2,869,194 + Dsui_2712 0.23 +0.2
2,869,261 + Dsui_2712 0.30 -0.6
2,869,294 - Dsui_2712 0.34 +0.1
2,869,466 + Dsui_2712 0.53 -0.4
2,869,495 - Dsui_2712 0.56 +0.3
2,869,502 + Dsui_2712 0.57 -0.2
2,869,506 - +2.4
2,869,661 + Dsui_2712 0.75 -1.5
2,869,702 - Dsui_2712 0.79 +0.1
2,869,702 - Dsui_2712 0.79 +0.1
2,869,745 - Dsui_2712 0.84 -0.1
2,869,813 + -0.3
2,869,889 + +0.1
2,869,891 - +1.2
2,869,940 - +0.4
2,870,006 + -0.1
2,870,027 - +0.9
2,870,117 - +1.1
2,870,201 - +0.0
2,870,222 - -0.1
2,870,254 + Dsui_2713 0.12 +0.3
2,870,262 - Dsui_2713 0.13 -0.2
2,870,340 + Dsui_2713 0.21 +0.5
2,870,357 + Dsui_2713 0.23 +0.4
2,870,471 - Dsui_2713 0.36 -0.8
2,870,574 + Dsui_2713 0.48 +0.2
2,870,628 - Dsui_2713 0.54 -0.2
2,870,656 - Dsui_2713 0.57 -0.4
2,870,726 + Dsui_2713 0.65 -0.8
2,870,726 + Dsui_2713 0.65 -0.9
2,870,818 - Dsui_2713 0.75 -0.1
2,870,878 - Dsui_2713 0.82 -0.0

Or see this region's nucleotide sequence