Strain Fitness in Dechlorosoma suillum PS around Dsui_2699

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2697 and Dsui_2698 are separated by 2 nucleotidesDsui_2698 and Dsui_2699 are separated by 51 nucleotidesDsui_2699 and Dsui_2700 are separated by 13 nucleotidesDsui_2700 and Dsui_2701 overlap by 17 nucleotides Dsui_2697: Dsui_2697 - peptide deformylase, at 2,850,343 to 2,850,891 _2697 Dsui_2698: Dsui_2698 - purine nucleoside phosphorylase, at 2,850,894 to 2,851,646 _2698 Dsui_2699: Dsui_2699 - hypoxanthine-guanine phosphoribosyltransferase, at 2,851,698 to 2,852,246 _2699 Dsui_2700: Dsui_2700 - UTP-glucose-1-phosphate uridylyltransferase, at 2,852,260 to 2,853,126 _2700 Dsui_2701: Dsui_2701 - DNA ligase, NAD-dependent, at 2,853,110 to 2,855,500 _2701 Position (kb) 2851 2852 2853Strain fitness (log2 ratio) -1 0 1at 2850.722 kb on - strand, within Dsui_2697at 2850.821 kb on - strand, within Dsui_2697at 2851.056 kb on - strand, within Dsui_2698at 2851.114 kb on + strand, within Dsui_2698at 2851.114 kb on + strandat 2851.132 kb on + strand, within Dsui_2698at 2851.163 kb on + strand, within Dsui_2698at 2851.182 kb on + strand, within Dsui_2698at 2851.263 kb on + strandat 2851.517 kb on - strand, within Dsui_2698at 2851.547 kb on + strand, within Dsui_2698at 2851.614 kb on + strandat 2851.621 kb on - strandat 2851.622 kb on - strandat 2851.864 kb on + strandat 2851.864 kb on + strand, within Dsui_2699at 2851.963 kb on - strand, within Dsui_2699at 2851.973 kb on - strand, within Dsui_2699at 2851.981 kb on + strandat 2851.981 kb on + strandat 2852.010 kb on - strand, within Dsui_2699at 2852.120 kb on - strand, within Dsui_2699at 2852.129 kb on + strand, within Dsui_2699at 2852.242 kb on + strandat 2852.242 kb on + strandat 2852.242 kb on + strandat 2852.250 kb on - strandat 2852.250 kb on - strandat 2852.250 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,850,722 - Dsui_2697 0.69 -0.5
2,850,821 - Dsui_2697 0.87 -0.5
2,851,056 - Dsui_2698 0.22 -0.6
2,851,114 + Dsui_2698 0.29 -0.5
2,851,114 + +1.1
2,851,132 + Dsui_2698 0.32 -0.4
2,851,163 + Dsui_2698 0.36 +0.8
2,851,182 + Dsui_2698 0.38 -0.0
2,851,263 + +0.8
2,851,517 - Dsui_2698 0.83 +0.2
2,851,547 + Dsui_2698 0.87 +1.6
2,851,614 + +1.4
2,851,621 - +0.6
2,851,622 - +0.4
2,851,864 + +0.1
2,851,864 + Dsui_2699 0.30 -0.1
2,851,963 - Dsui_2699 0.48 +0.3
2,851,973 - Dsui_2699 0.50 +0.5
2,851,981 + +0.4
2,851,981 + +0.1
2,852,010 - Dsui_2699 0.57 -1.0
2,852,120 - Dsui_2699 0.77 +0.3
2,852,129 + Dsui_2699 0.79 -0.4
2,852,242 + +1.2
2,852,242 + -0.6
2,852,242 + +1.4
2,852,250 - +0.5
2,852,250 - -0.1
2,852,250 - +0.9

Or see this region's nucleotide sequence