Experiment: Anaero. lactate (C), perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2561 and Dsui_2562 are separated by 17 nucleotides Dsui_2562 and Dsui_2563 are separated by 3 nucleotides
Dsui_2561: Dsui_2561 - type II secretory pathway, component PulD, at 2,711,394 to 2,712,605
_2561
Dsui_2562: Dsui_2562 - hypothetical protein, at 2,712,623 to 2,712,862
_2562
Dsui_2563: Dsui_2563 - hypothetical protein, at 2,712,866 to 2,713,087
_2563
Position (kb)
2712
2713 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2711.680 kb on - strand, within Dsui_2561 at 2711.738 kb on + strand at 2711.819 kb on + strand, within Dsui_2561 at 2711.866 kb on + strand, within Dsui_2561 at 2712.089 kb on + strand, within Dsui_2561 at 2712.089 kb on + strand, within Dsui_2561 at 2712.094 kb on + strand, within Dsui_2561 at 2712.285 kb on - strand, within Dsui_2561 at 2712.328 kb on + strand, within Dsui_2561 at 2712.336 kb on - strand, within Dsui_2561 at 2712.433 kb on - strand, within Dsui_2561 at 2712.466 kb on + strand, within Dsui_2561 at 2712.496 kb on + strand at 2712.554 kb on + strand at 2712.556 kb on - strand at 2712.608 kb on + strand at 2712.608 kb on + strand at 2712.620 kb on + strand at 2712.628 kb on - strand at 2712.677 kb on - strand at 2712.730 kb on + strand at 2712.776 kb on - strand, within Dsui_2562 at 2712.783 kb on + strand, within Dsui_2562 at 2712.783 kb on + strand, within Dsui_2562 at 2712.788 kb on + strand, within Dsui_2562 at 2712.788 kb on + strand, within Dsui_2562 at 2712.940 kb on + strand, within Dsui_2563 at 2712.948 kb on - strand, within Dsui_2563 at 2712.965 kb on + strand, within Dsui_2563 at 2712.973 kb on - strand, within Dsui_2563 at 2712.973 kb on - strand, within Dsui_2563 at 2713.041 kb on - strand, within Dsui_2563 at 2713.043 kb on + strand, within Dsui_2563 at 2713.057 kb on - strand, within Dsui_2563 at 2713.061 kb on - strand, within Dsui_2563 at 2713.081 kb on + strand at 2713.082 kb on + strand at 2713.103 kb on - strand at 2713.120 kb on - strand at 2713.140 kb on + strand at 2713.174 kb on + strand at 2713.182 kb on - strand at 2713.205 kb on + strand at 2713.232 kb on - strand at 2713.253 kb on + strand at 2713.305 kb on + strand at 2713.322 kb on - strand at 2713.333 kb on + strand at 2713.357 kb on - strand at 2713.357 kb on - strand at 2713.462 kb on + strand at 2713.462 kb on + strand at 2713.472 kb on + strand at 2713.487 kb on - strand at 2713.530 kb on + strand at 2713.530 kb on + strand at 2713.537 kb on + strand at 2713.542 kb on + strand at 2713.542 kb on + strand at 2713.542 kb on + strand at 2713.542 kb on + strand at 2713.542 kb on + strand at 2713.542 kb on + strand at 2713.542 kb on + strand at 2713.544 kb on + strand at 2713.544 kb on + strand at 2713.548 kb on + strand at 2713.550 kb on + strand at 2713.550 kb on - strand at 2713.621 kb on + strand at 2713.625 kb on + strand at 2713.628 kb on + strand at 2713.628 kb on + strand at 2713.633 kb on + strand at 2713.633 kb on + strand at 2713.645 kb on + strand at 2713.647 kb on + strand at 2713.655 kb on - strand at 2713.655 kb on - strand at 2713.679 kb on + strand at 2713.679 kb on + strand at 2713.679 kb on + strand at 2713.679 kb on + strand at 2713.679 kb on + strand at 2713.679 kb on + strand at 2713.679 kb on + strand at 2713.679 kb on + strand at 2713.679 kb on + strand at 2713.679 kb on + strand at 2713.679 kb on + strand at 2713.679 kb on + strand at 2713.687 kb on - strand at 2713.728 kb on - strand at 2713.734 kb on + strand at 2713.740 kb on + strand at 2713.742 kb on - strand at 2713.742 kb on - strand at 2713.753 kb on - strand at 2713.762 kb on - strand at 2713.785 kb on + strand at 2713.785 kb on + strand at 2713.793 kb on - strand at 2713.793 kb on - strand at 2713.800 kb on + strand at 2713.801 kb on - strand at 2713.806 kb on + strand at 2713.819 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor remove 2,711,680 - Dsui_2561 0.24 -0.2 2,711,738 + +0.8 2,711,819 + Dsui_2561 0.35 -0.9 2,711,866 + Dsui_2561 0.39 +0.0 2,712,089 + Dsui_2561 0.57 -1.0 2,712,089 + Dsui_2561 0.57 +0.3 2,712,094 + Dsui_2561 0.58 -1.0 2,712,285 - Dsui_2561 0.74 +1.0 2,712,328 + Dsui_2561 0.77 -0.7 2,712,336 - Dsui_2561 0.78 -0.2 2,712,433 - Dsui_2561 0.86 +1.1 2,712,466 + Dsui_2561 0.88 -0.5 2,712,496 + -0.1 2,712,554 + -0.7 2,712,556 - +2.7 2,712,608 + -0.1 2,712,608 + -3.0 2,712,620 + -0.1 2,712,628 - -1.0 2,712,677 - +0.4 2,712,730 + -0.4 2,712,776 - Dsui_2562 0.64 -0.6 2,712,783 + Dsui_2562 0.67 -0.1 2,712,783 + Dsui_2562 0.67 -1.3 2,712,788 + Dsui_2562 0.69 -1.5 2,712,788 + Dsui_2562 0.69 -0.9 2,712,940 + Dsui_2563 0.33 -1.0 2,712,948 - Dsui_2563 0.37 -0.6 2,712,965 + Dsui_2563 0.45 +0.8 2,712,973 - Dsui_2563 0.48 -0.2 2,712,973 - Dsui_2563 0.48 +0.3 2,713,041 - Dsui_2563 0.79 -1.3 2,713,043 + Dsui_2563 0.80 -1.7 2,713,057 - Dsui_2563 0.86 -0.7 2,713,061 - Dsui_2563 0.88 -0.9 2,713,081 + -0.6 2,713,082 + +0.4 2,713,103 - -0.6 2,713,120 - -0.2 2,713,140 + -0.6 2,713,174 + -1.7 2,713,182 - +1.8 2,713,205 + +1.0 2,713,232 - -1.0 2,713,253 + -0.2 2,713,305 + +0.4 2,713,322 - -0.6 2,713,333 + -1.6 2,713,357 - +0.0 2,713,357 - -0.6 2,713,462 + -0.7 2,713,462 + +1.4 2,713,472 + -0.5 2,713,487 - +0.8 2,713,530 + +0.3 2,713,530 + +0.3 2,713,537 + -0.6 2,713,542 + -0.2 2,713,542 + -0.2 2,713,542 + -0.6 2,713,542 + -0.3 2,713,542 + -0.3 2,713,542 + -0.5 2,713,542 + -0.6 2,713,544 + -0.7 2,713,544 + -0.1 2,713,548 + -0.9 2,713,550 + +0.0 2,713,550 - -0.4 2,713,621 + -0.9 2,713,625 + -0.1 2,713,628 + -0.4 2,713,628 + +0.1 2,713,633 + -0.4 2,713,633 + -1.2 2,713,645 + -0.3 2,713,647 + +0.1 2,713,655 - -2.2 2,713,655 - -1.2 2,713,679 + +0.2 2,713,679 + +0.0 2,713,679 + +0.1 2,713,679 + +0.6 2,713,679 + -0.2 2,713,679 + +0.1 2,713,679 + -0.1 2,713,679 + -0.2 2,713,679 + -0.5 2,713,679 + +0.5 2,713,679 + +0.2 2,713,679 + +0.0 2,713,687 - -0.2 2,713,728 - +0.9 2,713,734 + -0.2 2,713,740 + +0.2 2,713,742 - +0.0 2,713,742 - -0.0 2,713,753 - +0.2 2,713,762 - -0.5 2,713,785 + -0.3 2,713,785 + -0.9 2,713,793 - -0.9 2,713,793 - +0.1 2,713,800 + -0.4 2,713,801 - +0.5 2,713,806 + -0.2 2,713,819 - -0.3
Or see this region's nucleotide sequence