Strain Fitness in Dechlorosoma suillum PS around Dsui_2562

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2561 and Dsui_2562 are separated by 17 nucleotidesDsui_2562 and Dsui_2563 are separated by 3 nucleotides Dsui_2561: Dsui_2561 - type II secretory pathway, component PulD, at 2,711,394 to 2,712,605 _2561 Dsui_2562: Dsui_2562 - hypothetical protein, at 2,712,623 to 2,712,862 _2562 Dsui_2563: Dsui_2563 - hypothetical protein, at 2,712,866 to 2,713,087 _2563 Position (kb) 2712 2713Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2711.680 kb on - strand, within Dsui_2561at 2711.738 kb on + strandat 2711.819 kb on + strand, within Dsui_2561at 2711.866 kb on + strand, within Dsui_2561at 2712.089 kb on + strand, within Dsui_2561at 2712.089 kb on + strand, within Dsui_2561at 2712.094 kb on + strand, within Dsui_2561at 2712.285 kb on - strand, within Dsui_2561at 2712.328 kb on + strand, within Dsui_2561at 2712.336 kb on - strand, within Dsui_2561at 2712.433 kb on - strand, within Dsui_2561at 2712.466 kb on + strand, within Dsui_2561at 2712.496 kb on + strandat 2712.554 kb on + strandat 2712.556 kb on - strandat 2712.608 kb on + strandat 2712.608 kb on + strandat 2712.620 kb on + strandat 2712.628 kb on - strandat 2712.677 kb on - strandat 2712.730 kb on + strandat 2712.776 kb on - strand, within Dsui_2562at 2712.783 kb on + strand, within Dsui_2562at 2712.783 kb on + strand, within Dsui_2562at 2712.788 kb on + strand, within Dsui_2562at 2712.788 kb on + strand, within Dsui_2562at 2712.940 kb on + strand, within Dsui_2563at 2712.948 kb on - strand, within Dsui_2563at 2712.965 kb on + strand, within Dsui_2563at 2712.973 kb on - strand, within Dsui_2563at 2712.973 kb on - strand, within Dsui_2563at 2713.041 kb on - strand, within Dsui_2563at 2713.043 kb on + strand, within Dsui_2563at 2713.057 kb on - strand, within Dsui_2563at 2713.061 kb on - strand, within Dsui_2563at 2713.081 kb on + strandat 2713.082 kb on + strandat 2713.103 kb on - strandat 2713.120 kb on - strandat 2713.140 kb on + strandat 2713.174 kb on + strandat 2713.182 kb on - strandat 2713.205 kb on + strandat 2713.232 kb on - strandat 2713.253 kb on + strandat 2713.305 kb on + strandat 2713.322 kb on - strandat 2713.333 kb on + strandat 2713.357 kb on - strandat 2713.357 kb on - strandat 2713.462 kb on + strandat 2713.462 kb on + strandat 2713.472 kb on + strandat 2713.487 kb on - strandat 2713.530 kb on + strandat 2713.530 kb on + strandat 2713.537 kb on + strandat 2713.542 kb on + strandat 2713.542 kb on + strandat 2713.542 kb on + strandat 2713.542 kb on + strandat 2713.542 kb on + strandat 2713.542 kb on + strandat 2713.542 kb on + strandat 2713.544 kb on + strandat 2713.544 kb on + strandat 2713.548 kb on + strandat 2713.550 kb on + strandat 2713.550 kb on - strandat 2713.621 kb on + strandat 2713.625 kb on + strandat 2713.628 kb on + strandat 2713.628 kb on + strandat 2713.633 kb on + strandat 2713.633 kb on + strandat 2713.645 kb on + strandat 2713.647 kb on + strandat 2713.655 kb on - strandat 2713.655 kb on - strandat 2713.679 kb on + strandat 2713.679 kb on + strandat 2713.679 kb on + strandat 2713.679 kb on + strandat 2713.679 kb on + strandat 2713.679 kb on + strandat 2713.679 kb on + strandat 2713.679 kb on + strandat 2713.679 kb on + strandat 2713.679 kb on + strandat 2713.679 kb on + strandat 2713.679 kb on + strandat 2713.687 kb on - strandat 2713.728 kb on - strandat 2713.734 kb on + strandat 2713.740 kb on + strandat 2713.742 kb on - strandat 2713.742 kb on - strandat 2713.753 kb on - strandat 2713.762 kb on - strandat 2713.785 kb on + strandat 2713.785 kb on + strandat 2713.793 kb on - strandat 2713.793 kb on - strandat 2713.800 kb on + strandat 2713.801 kb on - strandat 2713.806 kb on + strandat 2713.819 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,711,680 - Dsui_2561 0.24 -0.2
2,711,738 + +0.8
2,711,819 + Dsui_2561 0.35 -0.9
2,711,866 + Dsui_2561 0.39 +0.0
2,712,089 + Dsui_2561 0.57 -1.0
2,712,089 + Dsui_2561 0.57 +0.3
2,712,094 + Dsui_2561 0.58 -1.0
2,712,285 - Dsui_2561 0.74 +1.0
2,712,328 + Dsui_2561 0.77 -0.7
2,712,336 - Dsui_2561 0.78 -0.2
2,712,433 - Dsui_2561 0.86 +1.1
2,712,466 + Dsui_2561 0.88 -0.5
2,712,496 + -0.1
2,712,554 + -0.7
2,712,556 - +2.7
2,712,608 + -0.1
2,712,608 + -3.0
2,712,620 + -0.1
2,712,628 - -1.0
2,712,677 - +0.4
2,712,730 + -0.4
2,712,776 - Dsui_2562 0.64 -0.6
2,712,783 + Dsui_2562 0.67 -0.1
2,712,783 + Dsui_2562 0.67 -1.3
2,712,788 + Dsui_2562 0.69 -1.5
2,712,788 + Dsui_2562 0.69 -0.9
2,712,940 + Dsui_2563 0.33 -1.0
2,712,948 - Dsui_2563 0.37 -0.6
2,712,965 + Dsui_2563 0.45 +0.8
2,712,973 - Dsui_2563 0.48 -0.2
2,712,973 - Dsui_2563 0.48 +0.3
2,713,041 - Dsui_2563 0.79 -1.3
2,713,043 + Dsui_2563 0.80 -1.7
2,713,057 - Dsui_2563 0.86 -0.7
2,713,061 - Dsui_2563 0.88 -0.9
2,713,081 + -0.6
2,713,082 + +0.4
2,713,103 - -0.6
2,713,120 - -0.2
2,713,140 + -0.6
2,713,174 + -1.7
2,713,182 - +1.8
2,713,205 + +1.0
2,713,232 - -1.0
2,713,253 + -0.2
2,713,305 + +0.4
2,713,322 - -0.6
2,713,333 + -1.6
2,713,357 - +0.0
2,713,357 - -0.6
2,713,462 + -0.7
2,713,462 + +1.4
2,713,472 + -0.5
2,713,487 - +0.8
2,713,530 + +0.3
2,713,530 + +0.3
2,713,537 + -0.6
2,713,542 + -0.2
2,713,542 + -0.2
2,713,542 + -0.6
2,713,542 + -0.3
2,713,542 + -0.3
2,713,542 + -0.5
2,713,542 + -0.6
2,713,544 + -0.7
2,713,544 + -0.1
2,713,548 + -0.9
2,713,550 + +0.0
2,713,550 - -0.4
2,713,621 + -0.9
2,713,625 + -0.1
2,713,628 + -0.4
2,713,628 + +0.1
2,713,633 + -0.4
2,713,633 + -1.2
2,713,645 + -0.3
2,713,647 + +0.1
2,713,655 - -2.2
2,713,655 - -1.2
2,713,679 + +0.2
2,713,679 + +0.0
2,713,679 + +0.1
2,713,679 + +0.6
2,713,679 + -0.2
2,713,679 + +0.1
2,713,679 + -0.1
2,713,679 + -0.2
2,713,679 + -0.5
2,713,679 + +0.5
2,713,679 + +0.2
2,713,679 + +0.0
2,713,687 - -0.2
2,713,728 - +0.9
2,713,734 + -0.2
2,713,740 + +0.2
2,713,742 - +0.0
2,713,742 - -0.0
2,713,753 - +0.2
2,713,762 - -0.5
2,713,785 + -0.3
2,713,785 + -0.9
2,713,793 - -0.9
2,713,793 - +0.1
2,713,800 + -0.4
2,713,801 - +0.5
2,713,806 + -0.2
2,713,819 - -0.3

Or see this region's nucleotide sequence