Strain Fitness in Dechlorosoma suillum PS around Dsui_2493

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2491 and Dsui_2492 overlap by 4 nucleotidesDsui_2492 and Dsui_2493 are separated by 195 nucleotidesDsui_2493 and Dsui_2494 are separated by 71 nucleotidesDsui_2494 and Dsui_2495 are separated by 15 nucleotidesDsui_2495 and Dsui_2496 are separated by 2 nucleotidesDsui_2496 and Dsui_2497 overlap by 4 nucleotides Dsui_2491: Dsui_2491 - transposase, TnpA family, at 2,639,903 to 2,642,932 _2491 Dsui_2492: Dsui_2492 - site-specific recombinase, DNA invertase Pin, at 2,642,929 to 2,643,537 _2492 Dsui_2493: Dsui_2493 - Hg(II)-responsive transcriptional regulator, at 2,643,733 to 2,644,167 _2493 Dsui_2494: Dsui_2494 - MerT mercuric transport protein, at 2,644,239 to 2,644,589 _2494 Dsui_2495: Dsui_2495 - mercuric transport protein periplasmic component, at 2,644,605 to 2,644,880 _2495 Dsui_2496: Dsui_2496 - Membrane transport protein MerF, at 2,644,883 to 2,645,128 _2496 Dsui_2497: Dsui_2497 - mercuric reductase, at 2,645,125 to 2,646,771 _2497 Position (kb) 2643 2644 2645Strain fitness (log2 ratio) -1 0 1 2at 2642.772 kb on + strandat 2642.785 kb on + strandat 2642.793 kb on - strandat 2642.892 kb on + strandat 2642.900 kb on - strandat 2643.011 kb on - strand, within Dsui_2492at 2643.011 kb on - strand, within Dsui_2492at 2643.179 kb on + strandat 2643.182 kb on - strand, within Dsui_2492at 2643.224 kb on - strand, within Dsui_2492at 2643.373 kb on + strand, within Dsui_2492at 2643.381 kb on - strand, within Dsui_2492at 2643.463 kb on + strand, within Dsui_2492at 2643.525 kb on + strandat 2643.533 kb on + strandat 2643.533 kb on + strandat 2643.554 kb on + strandat 2643.563 kb on - strandat 2643.730 kb on + strandat 2643.733 kb on - strandat 2643.738 kb on - strandat 2643.834 kb on - strand, within Dsui_2493at 2643.845 kb on + strand, within Dsui_2493at 2643.845 kb on + strand, within Dsui_2493at 2643.884 kb on + strand, within Dsui_2493at 2643.892 kb on - strand, within Dsui_2493at 2643.910 kb on + strand, within Dsui_2493at 2643.963 kb on + strandat 2643.970 kb on + strand, within Dsui_2493at 2643.971 kb on - strand, within Dsui_2493at 2644.060 kb on - strand, within Dsui_2493at 2644.084 kb on - strand, within Dsui_2493at 2644.098 kb on - strand, within Dsui_2493at 2644.210 kb on + strandat 2644.269 kb on + strandat 2644.665 kb on + strand, within Dsui_2495at 2644.672 kb on + strand, within Dsui_2495at 2644.674 kb on + strand, within Dsui_2495at 2644.680 kb on - strand, within Dsui_2495at 2644.692 kb on + strand, within Dsui_2495at 2644.700 kb on - strand, within Dsui_2495at 2644.742 kb on + strand, within Dsui_2495at 2644.798 kb on + strand, within Dsui_2495at 2644.801 kb on - strandat 2644.809 kb on + strand, within Dsui_2495at 2644.832 kb on + strand, within Dsui_2495at 2644.866 kb on - strandat 2644.869 kb on + strandat 2644.869 kb on + strandat 2644.869 kb on + strandat 2644.877 kb on - strandat 2644.909 kb on + strand, within Dsui_2496at 2644.953 kb on + strand, within Dsui_2496at 2645.024 kb on - strandat 2645.084 kb on + strand, within Dsui_2496at 2645.146 kb on + strandat 2645.146 kb on + strandat 2645.151 kb on + strandat 2645.151 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,642,772 + +0.4
2,642,785 + +0.1
2,642,793 - +0.4
2,642,892 + -0.4
2,642,900 - -0.5
2,643,011 - Dsui_2492 0.13 +1.4
2,643,011 - Dsui_2492 0.13 +1.0
2,643,179 + +0.8
2,643,182 - Dsui_2492 0.42 -0.2
2,643,224 - Dsui_2492 0.48 +0.3
2,643,373 + Dsui_2492 0.73 +0.4
2,643,381 - Dsui_2492 0.74 +1.3
2,643,463 + Dsui_2492 0.88 -0.8
2,643,525 + -0.3
2,643,533 + +1.4
2,643,533 + +1.7
2,643,554 + +1.0
2,643,563 - +0.7
2,643,730 + +0.3
2,643,733 - -0.4
2,643,738 - +0.9
2,643,834 - Dsui_2493 0.23 +0.1
2,643,845 + Dsui_2493 0.26 +0.0
2,643,845 + Dsui_2493 0.26 +0.0
2,643,884 + Dsui_2493 0.35 +0.1
2,643,892 - Dsui_2493 0.37 +1.5
2,643,910 + Dsui_2493 0.41 -0.6
2,643,963 + -0.4
2,643,970 + Dsui_2493 0.54 +0.8
2,643,971 - Dsui_2493 0.55 +0.4
2,644,060 - Dsui_2493 0.75 +0.8
2,644,084 - Dsui_2493 0.81 +0.4
2,644,098 - Dsui_2493 0.84 -0.0
2,644,210 + +0.4
2,644,269 + -1.3
2,644,665 + Dsui_2495 0.22 -0.2
2,644,672 + Dsui_2495 0.24 +2.0
2,644,674 + Dsui_2495 0.25 -0.5
2,644,680 - Dsui_2495 0.27 -0.4
2,644,692 + Dsui_2495 0.32 -0.0
2,644,700 - Dsui_2495 0.34 +0.8
2,644,742 + Dsui_2495 0.50 -0.1
2,644,798 + Dsui_2495 0.70 -0.3
2,644,801 - +1.4
2,644,809 + Dsui_2495 0.74 -0.9
2,644,832 + Dsui_2495 0.82 -1.2
2,644,866 - +0.1
2,644,869 + -0.9
2,644,869 + +0.1
2,644,869 + -0.5
2,644,877 - +1.4
2,644,909 + Dsui_2496 0.11 +0.7
2,644,953 + Dsui_2496 0.28 +0.2
2,645,024 - +0.8
2,645,084 + Dsui_2496 0.82 +0.6
2,645,146 + -0.1
2,645,146 + +0.0
2,645,151 + +0.1
2,645,151 + -0.5

Or see this region's nucleotide sequence