Strain Fitness in Dechlorosoma suillum PS around Dsui_2491

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2489 and Dsui_2490 are separated by 168 nucleotidesDsui_2490 and Dsui_2491 are separated by 22 nucleotidesDsui_2491 and Dsui_2492 overlap by 4 nucleotidesDsui_2492 and Dsui_2493 are separated by 195 nucleotides Dsui_2489: Dsui_2489 - polyhydroxyalkanoate depolymerase, intracellular, at 2,638,066 to 2,639,286 _2489 Dsui_2490: Dsui_2490 - protein kinase family protein, at 2,639,455 to 2,639,880 _2490 Dsui_2491: Dsui_2491 - transposase, TnpA family, at 2,639,903 to 2,642,932 _2491 Dsui_2492: Dsui_2492 - site-specific recombinase, DNA invertase Pin, at 2,642,929 to 2,643,537 _2492 Dsui_2493: Dsui_2493 - Hg(II)-responsive transcriptional regulator, at 2,643,733 to 2,644,167 _2493 Position (kb) 2639 2640 2641 2642 2643Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2638.972 kb on + strand, within Dsui_2489at 2639.032 kb on - strand, within Dsui_2489at 2639.033 kb on + strand, within Dsui_2489at 2639.150 kb on - strand, within Dsui_2489at 2639.192 kb on + strandat 2639.447 kb on - strandat 2639.461 kb on + strandat 2639.499 kb on + strand, within Dsui_2490at 2639.499 kb on + strand, within Dsui_2490at 2639.499 kb on + strand, within Dsui_2490at 2639.499 kb on + strand, within Dsui_2490at 2639.507 kb on - strandat 2639.507 kb on - strand, within Dsui_2490at 2639.507 kb on - strand, within Dsui_2490at 2639.507 kb on - strandat 2639.509 kb on + strand, within Dsui_2490at 2639.742 kb on + strand, within Dsui_2490at 2639.748 kb on - strand, within Dsui_2490at 2639.782 kb on + strand, within Dsui_2490at 2639.953 kb on - strandat 2639.958 kb on - strandat 2639.975 kb on - strandat 2639.975 kb on - strandat 2639.975 kb on - strandat 2639.978 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.026 kb on + strandat 2640.033 kb on - strandat 2640.033 kb on - strandat 2640.033 kb on - strandat 2640.033 kb on - strandat 2640.033 kb on - strandat 2640.033 kb on - strandat 2640.033 kb on - strandat 2640.033 kb on - strandat 2640.057 kb on + strandat 2640.059 kb on - strandat 2640.089 kb on + strandat 2640.092 kb on + strandat 2640.126 kb on - strandat 2640.126 kb on - strandat 2640.163 kb on - strandat 2640.188 kb on - strandat 2640.267 kb on - strand, within Dsui_2491at 2640.291 kb on - strand, within Dsui_2491at 2640.302 kb on - strand, within Dsui_2491at 2640.362 kb on - strand, within Dsui_2491at 2640.496 kb on + strand, within Dsui_2491at 2640.504 kb on - strand, within Dsui_2491at 2640.513 kb on + strand, within Dsui_2491at 2640.568 kb on + strand, within Dsui_2491at 2640.571 kb on - strand, within Dsui_2491at 2640.581 kb on - strand, within Dsui_2491at 2640.609 kb on - strand, within Dsui_2491at 2640.702 kb on + strand, within Dsui_2491at 2640.732 kb on - strand, within Dsui_2491at 2640.734 kb on + strand, within Dsui_2491at 2640.739 kb on + strand, within Dsui_2491at 2640.804 kb on - strand, within Dsui_2491at 2640.833 kb on + strand, within Dsui_2491at 2640.835 kb on + strand, within Dsui_2491at 2640.840 kb on + strand, within Dsui_2491at 2640.848 kb on - strand, within Dsui_2491at 2640.848 kb on - strand, within Dsui_2491at 2640.850 kb on - strand, within Dsui_2491at 2640.851 kb on - strand, within Dsui_2491at 2640.859 kb on + strand, within Dsui_2491at 2640.867 kb on - strand, within Dsui_2491at 2640.903 kb on + strand, within Dsui_2491at 2641.072 kb on + strand, within Dsui_2491at 2641.125 kb on - strand, within Dsui_2491at 2641.187 kb on + strand, within Dsui_2491at 2641.352 kb on - strand, within Dsui_2491at 2641.352 kb on - strand, within Dsui_2491at 2641.447 kb on + strand, within Dsui_2491at 2641.531 kb on + strand, within Dsui_2491at 2641.583 kb on - strand, within Dsui_2491at 2641.599 kb on - strand, within Dsui_2491at 2641.655 kb on - strand, within Dsui_2491at 2641.682 kb on + strandat 2641.710 kb on + strand, within Dsui_2491at 2641.720 kb on - strand, within Dsui_2491at 2641.743 kb on + strand, within Dsui_2491at 2641.871 kb on + strand, within Dsui_2491at 2641.931 kb on - strand, within Dsui_2491at 2641.950 kb on + strandat 2642.064 kb on - strand, within Dsui_2491at 2642.081 kb on - strand, within Dsui_2491at 2642.109 kb on - strand, within Dsui_2491at 2642.122 kb on + strand, within Dsui_2491at 2642.130 kb on - strand, within Dsui_2491at 2642.131 kb on - strand, within Dsui_2491at 2642.133 kb on + strand, within Dsui_2491at 2642.144 kb on + strand, within Dsui_2491at 2642.298 kb on - strand, within Dsui_2491at 2642.305 kb on + strand, within Dsui_2491at 2642.647 kb on + strandat 2642.680 kb on + strandat 2642.726 kb on - strandat 2642.772 kb on + strandat 2642.785 kb on + strandat 2642.793 kb on - strandat 2642.892 kb on + strandat 2642.900 kb on - strandat 2643.011 kb on - strand, within Dsui_2492at 2643.011 kb on - strand, within Dsui_2492at 2643.179 kb on + strandat 2643.182 kb on - strand, within Dsui_2492at 2643.224 kb on - strand, within Dsui_2492at 2643.373 kb on + strand, within Dsui_2492at 2643.381 kb on - strand, within Dsui_2492at 2643.463 kb on + strand, within Dsui_2492at 2643.525 kb on + strandat 2643.533 kb on + strandat 2643.533 kb on + strandat 2643.554 kb on + strandat 2643.563 kb on - strandat 2643.730 kb on + strandat 2643.733 kb on - strandat 2643.738 kb on - strandat 2643.834 kb on - strand, within Dsui_2493at 2643.845 kb on + strand, within Dsui_2493at 2643.845 kb on + strand, within Dsui_2493at 2643.884 kb on + strand, within Dsui_2493at 2643.892 kb on - strand, within Dsui_2493at 2643.910 kb on + strand, within Dsui_2493

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,638,972 + Dsui_2489 0.74 +0.6
2,639,032 - Dsui_2489 0.79 -0.2
2,639,033 + Dsui_2489 0.79 -0.6
2,639,150 - Dsui_2489 0.89 +1.0
2,639,192 + -0.6
2,639,447 - +1.7
2,639,461 + +0.1
2,639,499 + Dsui_2490 0.10 +1.3
2,639,499 + Dsui_2490 0.10 +1.1
2,639,499 + Dsui_2490 0.10 -1.5
2,639,499 + Dsui_2490 0.10 +0.5
2,639,507 - +1.4
2,639,507 - Dsui_2490 0.12 -0.2
2,639,507 - Dsui_2490 0.12 -1.3
2,639,507 - +1.8
2,639,509 + Dsui_2490 0.13 +0.7
2,639,742 + Dsui_2490 0.67 +0.2
2,639,748 - Dsui_2490 0.69 +1.3
2,639,782 + Dsui_2490 0.77 +0.1
2,639,953 - -0.2
2,639,958 - -1.1
2,639,975 - -0.9
2,639,975 - +1.8
2,639,975 - -0.1
2,639,978 + -0.3
2,640,025 + +0.2
2,640,025 + +1.1
2,640,025 + +1.1
2,640,025 + +0.5
2,640,025 + -0.4
2,640,025 + -0.6
2,640,025 + +0.5
2,640,025 + -0.4
2,640,025 + -1.0
2,640,026 + -0.2
2,640,033 - +0.1
2,640,033 - +0.3
2,640,033 - +0.8
2,640,033 - +0.3
2,640,033 - +0.1
2,640,033 - +0.8
2,640,033 - -0.8
2,640,033 - +0.4
2,640,057 + -1.1
2,640,059 - +1.1
2,640,089 + -1.0
2,640,092 + +0.8
2,640,126 - -0.1
2,640,126 - +0.2
2,640,163 - +0.8
2,640,188 - -0.3
2,640,267 - Dsui_2491 0.12 -0.3
2,640,291 - Dsui_2491 0.13 +0.7
2,640,302 - Dsui_2491 0.13 -0.2
2,640,362 - Dsui_2491 0.15 +0.8
2,640,496 + Dsui_2491 0.20 -0.5
2,640,504 - Dsui_2491 0.20 -1.4
2,640,513 + Dsui_2491 0.20 -0.9
2,640,568 + Dsui_2491 0.22 -0.7
2,640,571 - Dsui_2491 0.22 +0.1
2,640,581 - Dsui_2491 0.22 -0.2
2,640,609 - Dsui_2491 0.23 +1.3
2,640,702 + Dsui_2491 0.26 +0.4
2,640,732 - Dsui_2491 0.27 +1.0
2,640,734 + Dsui_2491 0.27 +0.3
2,640,739 + Dsui_2491 0.28 +0.8
2,640,804 - Dsui_2491 0.30 +0.3
2,640,833 + Dsui_2491 0.31 -0.5
2,640,835 + Dsui_2491 0.31 -0.1
2,640,840 + Dsui_2491 0.31 -0.3
2,640,848 - Dsui_2491 0.31 +0.7
2,640,848 - Dsui_2491 0.31 +0.3
2,640,850 - Dsui_2491 0.31 +0.9
2,640,851 - Dsui_2491 0.31 +0.8
2,640,859 + Dsui_2491 0.32 +0.4
2,640,867 - Dsui_2491 0.32 -0.2
2,640,903 + Dsui_2491 0.33 +0.7
2,641,072 + Dsui_2491 0.39 +0.2
2,641,125 - Dsui_2491 0.40 +1.4
2,641,187 + Dsui_2491 0.42 +0.3
2,641,352 - Dsui_2491 0.48 +0.2
2,641,352 - Dsui_2491 0.48 +0.4
2,641,447 + Dsui_2491 0.51 +0.4
2,641,531 + Dsui_2491 0.54 -0.4
2,641,583 - Dsui_2491 0.55 +0.9
2,641,599 - Dsui_2491 0.56 +0.2
2,641,655 - Dsui_2491 0.58 -0.3
2,641,682 + +0.4
2,641,710 + Dsui_2491 0.60 +0.9
2,641,720 - Dsui_2491 0.60 +0.3
2,641,743 + Dsui_2491 0.61 -0.6
2,641,871 + Dsui_2491 0.65 +0.6
2,641,931 - Dsui_2491 0.67 +0.6
2,641,950 + +1.4
2,642,064 - Dsui_2491 0.71 -0.4
2,642,081 - Dsui_2491 0.72 -2.8
2,642,109 - Dsui_2491 0.73 +0.5
2,642,122 + Dsui_2491 0.73 +0.7
2,642,130 - Dsui_2491 0.73 -0.5
2,642,131 - Dsui_2491 0.74 +0.3
2,642,133 + Dsui_2491 0.74 -0.7
2,642,144 + Dsui_2491 0.74 -2.0
2,642,298 - Dsui_2491 0.79 +0.2
2,642,305 + Dsui_2491 0.79 -0.2
2,642,647 + -0.4
2,642,680 + -0.6
2,642,726 - -0.2
2,642,772 + +0.4
2,642,785 + +0.1
2,642,793 - +0.4
2,642,892 + -0.4
2,642,900 - -0.5
2,643,011 - Dsui_2492 0.13 +1.4
2,643,011 - Dsui_2492 0.13 +1.0
2,643,179 + +0.8
2,643,182 - Dsui_2492 0.42 -0.2
2,643,224 - Dsui_2492 0.48 +0.3
2,643,373 + Dsui_2492 0.73 +0.4
2,643,381 - Dsui_2492 0.74 +1.3
2,643,463 + Dsui_2492 0.88 -0.8
2,643,525 + -0.3
2,643,533 + +1.4
2,643,533 + +1.7
2,643,554 + +1.0
2,643,563 - +0.7
2,643,730 + +0.3
2,643,733 - -0.4
2,643,738 - +0.9
2,643,834 - Dsui_2493 0.23 +0.1
2,643,845 + Dsui_2493 0.26 +0.0
2,643,845 + Dsui_2493 0.26 +0.0
2,643,884 + Dsui_2493 0.35 +0.1
2,643,892 - Dsui_2493 0.37 +1.5
2,643,910 + Dsui_2493 0.41 -0.6

Or see this region's nucleotide sequence