Strain Fitness in Dechlorosoma suillum PS around Dsui_2490

Experiment: Anaero. lactate (C), perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2489 and Dsui_2490 are separated by 168 nucleotidesDsui_2490 and Dsui_2491 are separated by 22 nucleotides Dsui_2489: Dsui_2489 - polyhydroxyalkanoate depolymerase, intracellular, at 2,638,066 to 2,639,286 _2489 Dsui_2490: Dsui_2490 - protein kinase family protein, at 2,639,455 to 2,639,880 _2490 Dsui_2491: Dsui_2491 - transposase, TnpA family, at 2,639,903 to 2,642,932 _2491 Position (kb) 2639 2640Strain fitness (log2 ratio) -1 0 1 2at 2638.462 kb on - strand, within Dsui_2489at 2638.462 kb on - strand, within Dsui_2489at 2638.595 kb on + strand, within Dsui_2489at 2638.636 kb on + strand, within Dsui_2489at 2638.639 kb on + strandat 2638.689 kb on - strand, within Dsui_2489at 2638.696 kb on - strand, within Dsui_2489at 2638.840 kb on + strand, within Dsui_2489at 2638.849 kb on + strandat 2638.972 kb on + strand, within Dsui_2489at 2639.032 kb on - strand, within Dsui_2489at 2639.033 kb on + strand, within Dsui_2489at 2639.150 kb on - strand, within Dsui_2489at 2639.192 kb on + strandat 2639.447 kb on - strandat 2639.461 kb on + strandat 2639.499 kb on + strand, within Dsui_2490at 2639.499 kb on + strand, within Dsui_2490at 2639.499 kb on + strand, within Dsui_2490at 2639.499 kb on + strand, within Dsui_2490at 2639.507 kb on - strandat 2639.507 kb on - strand, within Dsui_2490at 2639.507 kb on - strand, within Dsui_2490at 2639.507 kb on - strandat 2639.509 kb on + strand, within Dsui_2490at 2639.742 kb on + strand, within Dsui_2490at 2639.748 kb on - strand, within Dsui_2490at 2639.782 kb on + strand, within Dsui_2490at 2639.953 kb on - strandat 2639.958 kb on - strandat 2639.975 kb on - strandat 2639.975 kb on - strandat 2639.975 kb on - strandat 2639.978 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.025 kb on + strandat 2640.026 kb on + strandat 2640.033 kb on - strandat 2640.033 kb on - strandat 2640.033 kb on - strandat 2640.033 kb on - strandat 2640.033 kb on - strandat 2640.033 kb on - strandat 2640.033 kb on - strandat 2640.033 kb on - strandat 2640.057 kb on + strandat 2640.059 kb on - strandat 2640.089 kb on + strandat 2640.092 kb on + strandat 2640.126 kb on - strandat 2640.126 kb on - strandat 2640.163 kb on - strandat 2640.188 kb on - strandat 2640.267 kb on - strand, within Dsui_2491at 2640.291 kb on - strand, within Dsui_2491at 2640.302 kb on - strand, within Dsui_2491at 2640.362 kb on - strand, within Dsui_2491at 2640.496 kb on + strand, within Dsui_2491at 2640.504 kb on - strand, within Dsui_2491at 2640.513 kb on + strand, within Dsui_2491at 2640.568 kb on + strand, within Dsui_2491at 2640.571 kb on - strand, within Dsui_2491at 2640.581 kb on - strand, within Dsui_2491at 2640.609 kb on - strand, within Dsui_2491at 2640.702 kb on + strand, within Dsui_2491at 2640.732 kb on - strand, within Dsui_2491at 2640.734 kb on + strand, within Dsui_2491at 2640.739 kb on + strand, within Dsui_2491at 2640.804 kb on - strand, within Dsui_2491at 2640.833 kb on + strand, within Dsui_2491at 2640.835 kb on + strand, within Dsui_2491at 2640.840 kb on + strand, within Dsui_2491at 2640.848 kb on - strand, within Dsui_2491at 2640.848 kb on - strand, within Dsui_2491at 2640.850 kb on - strand, within Dsui_2491at 2640.851 kb on - strand, within Dsui_2491at 2640.859 kb on + strand, within Dsui_2491at 2640.867 kb on - strand, within Dsui_2491

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), perchlorate electron acceptor
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2,638,462 - Dsui_2489 0.32 -0.8
2,638,462 - Dsui_2489 0.32 +0.1
2,638,595 + Dsui_2489 0.43 +0.1
2,638,636 + Dsui_2489 0.47 +1.5
2,638,639 + +0.8
2,638,689 - Dsui_2489 0.51 +0.1
2,638,696 - Dsui_2489 0.52 +0.7
2,638,840 + Dsui_2489 0.63 +0.8
2,638,849 + +0.4
2,638,972 + Dsui_2489 0.74 +0.6
2,639,032 - Dsui_2489 0.79 -0.2
2,639,033 + Dsui_2489 0.79 -0.6
2,639,150 - Dsui_2489 0.89 +1.0
2,639,192 + -0.6
2,639,447 - +1.7
2,639,461 + +0.1
2,639,499 + Dsui_2490 0.10 +1.3
2,639,499 + Dsui_2490 0.10 +1.1
2,639,499 + Dsui_2490 0.10 -1.5
2,639,499 + Dsui_2490 0.10 +0.5
2,639,507 - +1.4
2,639,507 - Dsui_2490 0.12 -0.2
2,639,507 - Dsui_2490 0.12 -1.3
2,639,507 - +1.8
2,639,509 + Dsui_2490 0.13 +0.7
2,639,742 + Dsui_2490 0.67 +0.2
2,639,748 - Dsui_2490 0.69 +1.3
2,639,782 + Dsui_2490 0.77 +0.1
2,639,953 - -0.2
2,639,958 - -1.1
2,639,975 - -0.9
2,639,975 - +1.8
2,639,975 - -0.1
2,639,978 + -0.3
2,640,025 + +0.2
2,640,025 + +1.1
2,640,025 + +1.1
2,640,025 + +0.5
2,640,025 + -0.4
2,640,025 + -0.6
2,640,025 + +0.5
2,640,025 + -0.4
2,640,025 + -1.0
2,640,026 + -0.2
2,640,033 - +0.1
2,640,033 - +0.3
2,640,033 - +0.8
2,640,033 - +0.3
2,640,033 - +0.1
2,640,033 - +0.8
2,640,033 - -0.8
2,640,033 - +0.4
2,640,057 + -1.1
2,640,059 - +1.1
2,640,089 + -1.0
2,640,092 + +0.8
2,640,126 - -0.1
2,640,126 - +0.2
2,640,163 - +0.8
2,640,188 - -0.3
2,640,267 - Dsui_2491 0.12 -0.3
2,640,291 - Dsui_2491 0.13 +0.7
2,640,302 - Dsui_2491 0.13 -0.2
2,640,362 - Dsui_2491 0.15 +0.8
2,640,496 + Dsui_2491 0.20 -0.5
2,640,504 - Dsui_2491 0.20 -1.4
2,640,513 + Dsui_2491 0.20 -0.9
2,640,568 + Dsui_2491 0.22 -0.7
2,640,571 - Dsui_2491 0.22 +0.1
2,640,581 - Dsui_2491 0.22 -0.2
2,640,609 - Dsui_2491 0.23 +1.3
2,640,702 + Dsui_2491 0.26 +0.4
2,640,732 - Dsui_2491 0.27 +1.0
2,640,734 + Dsui_2491 0.27 +0.3
2,640,739 + Dsui_2491 0.28 +0.8
2,640,804 - Dsui_2491 0.30 +0.3
2,640,833 + Dsui_2491 0.31 -0.5
2,640,835 + Dsui_2491 0.31 -0.1
2,640,840 + Dsui_2491 0.31 -0.3
2,640,848 - Dsui_2491 0.31 +0.7
2,640,848 - Dsui_2491 0.31 +0.3
2,640,850 - Dsui_2491 0.31 +0.9
2,640,851 - Dsui_2491 0.31 +0.8
2,640,859 + Dsui_2491 0.32 +0.4
2,640,867 - Dsui_2491 0.32 -0.2

Or see this region's nucleotide sequence